View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7409_low_6 (Length: 334)

Name: NF7409_low_6
Description: NF7409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7409_low_6
NF7409_low_6
[»] chr5 (13 HSPs)
chr5 (1-317)||(1163966-1164282)
chr5 (1-313)||(1849488-1849800)
chr5 (1-221)||(3299109-3299329)
chr5 (1-221)||(3392002-3392222)
chr5 (1-226)||(38987306-38987531)
chr5 (1-226)||(40417896-40418121)
chr5 (1-226)||(39726028-39726244)
chr5 (1-226)||(39879430-39879646)
chr5 (1-226)||(39168516-39168732)
chr5 (1-220)||(39399520-39399733)
chr5 (246-313)||(3299002-3299069)
chr5 (246-313)||(3391895-3391962)
chr5 (169-220)||(40596251-40596302)
[»] chr4 (1 HSPs)
chr4 (1-220)||(25912547-25912766)


Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 1163966 - 1164282
Alignment:
Q  1 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163966 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 1164065  T
Q  101 gttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1164066 gttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 1164165  T
Q  201 ggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaacctgggcaggaagtatgtccactataatattgacaacttccgcagcatcaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1164166 ggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaacctgggcaggaagtatgtccactataagattgacaacttccgcagcatcaga 1164265  T
Q  301 taagctattgaaataga 317  Q
    |||||||||||||||||    
T  1164266 taagctattgaaataga 1164282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 1849800 - 1849488
Alignment:
Q  1 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1849800 taactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaacagcgggtcaaggtaaatggatcaagcaaagtaaat 1849701  T
Q  101 gttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849700 gttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 1849601  T
Q  201 ggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaacctgggcaggaagtatgtccactataatattgacaacttccgcagcatcaga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||  ||||| ||||||||||| ||||||||||||    
T  1849600 ggacgatttcaacagaaaaaaggtatggatcaatcttgttccactgaaccagggcaggaagtatgcccgttataagattgacaactttcgcagcatcaga 1849501  T
Q  301 taagctattgaaa 313  Q
    || ||||||||||    
T  1849500 tatgctattgaaa 1849488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3299329 - 3299109
Alignment:
Q  1 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299329 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 3299230  T
Q  101 gttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 200  Q
     |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  3299229 attttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatccccgcaacaaattg 3299130  T
Q  201 ggacgatttcaacagaaaaaa 221  Q
    |||||||||||||||||||||    
T  3299129 ggacgatttcaacagaaaaaa 3299109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3392222 - 3392002
Alignment:
Q  1 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392222 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 3392123  T
Q  101 gttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 200  Q
     |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  3392122 attttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaataatcaaatccccgcaacaaattg 3392023  T
Q  201 ggacgatttcaacagaaaaaa 221  Q
    |||||||||||||||||||||    
T  3392022 ggacgatttcaacagaaaaaa 3392002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 38987531 - 38987306
Alignment:
Q  1 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 100  Q
    |||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  38987531 taactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 38987432  T
Q  101 gttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 200  Q
    ||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| ||||  ||||||||  |||||||||||||||||||| |    
T  38987431 gttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacattaggaggcagaaagatcaaatccccgcagcaaatgg 38987332  T
Q  201 ggacgatttcaacagaaaaaaggtat 226  Q
    ||||||||||||||||||||||||||    
T  38987331 ggacgatttcaacagaaaaaaggtat 38987306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 40418121 - 40417896
Alignment:
Q  1 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 100  Q
    |||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  40418121 taactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 40418022  T
Q  101 gttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 200  Q
    ||||||||||||||||| ||||| ||||||||||||||||||  ||| ||||||||| ||| ||||  ||||||||  |||||||||||||||||||| |    
T  40418021 gttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaaagatcaaatccccgcagcaaatgg 40417922  T
Q  201 ggacgatttcaacagaaaaaaggtat 226  Q
    ||||||||||||||  ||||||||||    
T  40417921 ggacgatttcaacacgaaaaaggtat 40417896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 39726244 - 39726028
Alignment:
Q  1 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 100  Q
    |||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  39726244 taactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 39726145  T
Q  101 gttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 200  Q
    ||||||||||||||||| || || |         ||||||||||||| ||||||||| |||  |||  ||||||||  |||||||||||||||||||| |    
T  39726144 gttttggcaaccctagtgcatatga---------caatatttggacccaaagaagcaacaacgttaggaggcagaaagatcaaatccccgcagcaaatgg 39726054  T
Q  201 ggacgatttcaacagaaaaaaggtat 226  Q
    ||||||||||||||||||||||||||    
T  39726053 ggacgatttcaacagaaaaaaggtat 39726028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 39879646 - 39879430
Alignment:
Q  1 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 100  Q
    |||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  39879646 taactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 39879547  T
Q  101 gttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 200  Q
    ||||||||||||||||| || || |         ||||||||||||| ||||||||| |||  |||  ||||||||  |||||||||||||||||||| |    
T  39879546 gttttggcaaccctagtgcatatga---------caatatttggacccaaagaagcaacaacgttaggaggcagaaagatcaaatccccgcagcaaatgg 39879456  T
Q  201 ggacgatttcaacagaaaaaaggtat 226  Q
    ||||||||| ||||  ||||||||||    
T  39879455 ggacgattttaacacgaaaaaggtat 39879430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 39168732 - 39168516
Alignment:
Q  1 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 100  Q
    |||||||| ||||| ||||||| ||||||||||||||| |||||| | | ||||||||||| || |    |||||||||||||||||||| ||||||| |    
T  39168732 taactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatggatcaagtaaagtaatt 39168633  T
Q  101 gttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 200  Q
     |||||||||||||||| || ||||         ||||||||| ||| | || |||||||||||||   ||||||| ||||||||| |||||| ||||||    
T  39168632 tttttggcaaccctagtgcatataa---------caatatttgcaccgagagtagcagcaatattagggggcagaaaaatcaaatctccgcagaaaattg 39168542  T
Q  201 ggacgatttcaacagaaaaaaggtat 226  Q
    |||||||||||||| ||||| |||||    
T  39168541 ggacgatttcaacaaaaaaatggtat 39168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 39399733 - 39399520
Alignment:
Q  1 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaa---agta 97  Q
    |||||||| ||||  ||||||| ||||||| ||||||| |||||| ||| ||||||||||| || |   ||||||||||||||||||||||||   ||||    
T  39399733 taactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatggatcaagcaaagtagta 39399634  T
Q  98 aatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaa 197  Q
    | | |||||||||||||||| || || |         ||||||||| ||| || |||||||||| || |  |||||||| ||||||||||||||||||||    
T  39399633 atttttttggcaaccctagtgcatatga---------caatatttgcaccgaacgaagcagcaacatcaggaggcagaaaaatcaaatccccgcagcaaa 39399543  T
Q  198 ttgggacgatttcaacagaaaaa 220  Q
    | ||||||||||||||| |||||    
T  39399542 tggggacgatttcaacaaaaaaa 39399520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 3299069 - 3299002
Alignment:
Q  246 gaacctgggcaggaagtatgtccactataatattgacaacttccgcagcatcagataagctattgaaa 313  Q
    |||||| || |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  3299069 gaaccttggaaggaagtatgtccactataagattgacaacatccgtagcatcagataagctattgaaa 3299002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 3391962 - 3391895
Alignment:
Q  246 gaacctgggcaggaagtatgtccactataatattgacaacttccgcagcatcagataagctattgaaa 313  Q
    |||||| || |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  3391962 gaaccttggaaggaagtatgtccactataagattgacaacatccgtagcatcagataagctattgaaa 3391895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 40596302 - 40596251
Alignment:
Q  169 aggcagaataatcaaatccccgcagcaaattgggacgatttcaacagaaaaa 220  Q
    |||||||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  40596302 aggcagaaaaatcaaatccccgtagcaaatggggacgatttcaacagaaaaa 40596251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 25912547 - 25912766
Alignment:
Q  1 taactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaat 100  Q
    |||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||| |||||||| || |||||||||||||||||||| |||||||||    
T  25912547 taactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatggatcaagtaaagtaaat 25912646  T
Q  101 gttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatcaaatccccgcagcaaattg 200  Q
    ||||||||||||||||| ||||| ||||||||||||||||||  ||  ||||||||||||| ||||  |||||||| ||||||||||| |||| |||| |    
T  25912647 gttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaaaaatcaaatcccagcagaaaatgg 25912746  T
Q  201 ggacgatttcaacagaaaaa 220  Q
    |||||||||||||| |||||    
T  25912747 ggacgatttcaacaaaaaaa 25912766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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