View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7409_low_9 (Length: 228)

Name: NF7409_low_9
Description: NF7409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7409_low_9
NF7409_low_9
[»] chr2 (8 HSPs)
chr2 (1-228)||(20481290-20481517)
chr2 (5-228)||(28019671-28019885)
chr2 (1-147)||(20486112-20486258)
chr2 (5-148)||(28014928-28015062)
chr2 (137-217)||(23683063-23683143)
chr2 (141-199)||(13133061-13133119)
chr2 (143-178)||(24509621-24509656)
chr2 (150-223)||(19913978-19914051)
[»] chr5 (7 HSPs)
chr5 (4-228)||(16988456-16988681)
chr5 (137-217)||(36731131-36731211)
chr5 (144-196)||(20321837-20321889)
chr5 (139-217)||(23883270-23883348)
chr5 (141-199)||(26498342-26498400)
chr5 (136-196)||(15451163-15451223)
chr5 (149-228)||(26619399-26619478)
[»] chr6 (6 HSPs)
chr6 (5-228)||(6344642-6344856)
chr6 (4-147)||(32622019-32622163)
chr6 (5-147)||(6339900-6340033)
chr6 (144-196)||(5918600-5918652)
chr6 (152-217)||(9606867-9606932)
chr6 (141-213)||(14817257-14817329)
[»] chr4 (6 HSPs)
chr4 (141-223)||(14041268-14041350)
chr4 (140-196)||(22645832-22645888)
chr4 (141-191)||(14033775-14033825)
chr4 (139-196)||(35268196-35268253)
chr4 (141-196)||(19799178-19799233)
chr4 (149-196)||(23165220-23165267)
[»] chr1 (4 HSPs)
chr1 (137-217)||(37736596-37736676)
chr1 (137-196)||(52780150-52780209)
chr1 (139-196)||(9801598-9801655)
chr1 (149-201)||(30618356-30618408)
[»] scaffold0329 (1 HSPs)
scaffold0329 (137-196)||(13479-13538)
[»] chr8 (4 HSPs)
chr8 (137-196)||(620863-620922)
chr8 (137-196)||(614469-614529)
chr8 (139-196)||(18550371-18550428)
chr8 (140-196)||(44231490-44231546)
[»] chr3 (5 HSPs)
chr3 (137-196)||(12298870-12298929)
chr3 (137-196)||(19584462-19584521)
chr3 (141-199)||(8838501-8838559)
chr3 (141-199)||(55312437-55312495)
chr3 (140-196)||(44666264-44666320)
[»] scaffold0209 (1 HSPs)
scaffold0209 (137-196)||(27253-27313)
[»] chr7 (1 HSPs)
chr7 (139-217)||(19812489-19812567)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 20481290 - 20481517
Alignment:
Q  1 tcaggttatttatacaagggaattgtactgtctaatatgagaatgtactactatacttaagctattgtactacactttaagtaacttgtactgcaaggca 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20481290 tcaggttatttatacaaaggaattgtactgtctaatatgagaatgtactactatacttaagctattgtactacactttaagtaacttgtactgcaaggca 20481389  T
Q  101 ttgcttttcttcatactttgtttcttcagattttgtattatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  20481390 ttgcttttcttcatactttgtttcttcagattttgtattatgtaatagccccccacaagatggaggttgataaatgtctagcaaccacaacttggaaagt 20481489  T
Q  201 aaaatgtgaaaaggctgtggaaacagag 228  Q
    ||||||| ||||||||||||||||||||    
T  20481490 aaaatgttaaaaggctgtggaaacagag 20481517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 28019885 - 28019671
Alignment:
Q  5 gttatttatacaagggaattgtactgtctaatatgagaatgtactactatacttaagctattgtactacactttaagtaacttgtactgcaaggcattgc 104  Q
    |||||||||||||  |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||             
T  28019885 gttatttatacaaatgaattgtactatcttatatgtgaatgtactactatacttaagctattgtactacattttaagtagcttgtactgca--------- 28019795  T
Q  105 ttttcttcatactttgtttcttcagattttgtattatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaa 204  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28019794 ttttcttcatgctttgtttcttcagattttgtattatgtaatagccccccacaagatggaggttggtagatgtctagcaaccccaacttggaaagtaaaa 28019695  T
Q  205 tgtgaaaaggctgtggaaacagag 228  Q
    ||| |||||||||||| |||||||    
T  28019694 tgttaaaaggctgtgggaacagag 28019671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 20486112 - 20486258
Alignment:
Q  1 tcaggttatttatacaagggaattgtactgtctaatatgagaatgtactactatacttaagctattgtactacactttaagtaacttgtactgcaaggca 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20486112 tcaggttatttatacaaaggaattgtactgtctaatatgagaatgtactactatacttaagctattgtactacactttaagtaacttgtactgcaaggca 20486211  T
Q  101 ttgcttttcttcatactttgtttcttcagattttgtattatgtaata 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20486212 ttgcttttcttcatactttgtttcttcagattttgtattatgtaata 20486258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 28015062 - 28014928
Alignment:
Q  5 gttatttatacaagggaattgtactgtctaatatgagaatgtactactatacttaagctattgtactacactttaagtaacttgtactgcaaggcattgc 104  Q
    |||||||||||||  |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||             
T  28015062 gttatttatacaaatgaattgtactatcttatatgtgaatgtactactatacttaagctattgtactacattttaagtagcttgtactgca--------- 28014972  T
Q  105 ttttcttcatactttgtttcttcagattttgtattatgtaatag 148  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  28014971 ttttcttcatgctttgtttcttcagattttgtattatgtaatag 28014928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 23683143 - 23683063
Alignment:
Q  137 attatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaatgtgaaaaggctg 217  Q
    |||||| ||||||| |||||||||||||||||||||||| |||| ||| ||||||||||| | || | | |||||||||||    
T  23683143 attatgcaatagcctcccacaagatggaggttggtaaatatctaccaatcccaacttggataatagagtatgaaaaggctg 23683063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 13133119 - 13133061
Alignment:
Q  141 tgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaag 199  Q
    ||||||| ||||||||||| |||||| ||||| ||||||| || |||||||||||||||    
T  13133119 tgtaatatccccccacaagttggagggtggtagatgtctaacatccccaacttggaaag 13133061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 178
Target Start/End: Complemental strand, 24509656 - 24509621
Alignment:
Q  143 taatagccccccacaagatggaggttggtaaatgtc 178  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24509656 taatacccccccacaagatggaggttggtaaatgtc 24509621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 19913978 - 19914051
Alignment:
Q  150 cccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaatgtgaaaaggctgtggaaa 223  Q
    |||||||||| |||||||||||| || || | ||||||||||||||| |  ||||  | |||||||||||||||    
T  19913978 cccccacaagttggaggttggtatatatccaacaaccccaacttggataacaaaagattaaaaggctgtggaaa 19914051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 16988456 - 16988681
Alignment:
Q  4 ggttatttatacaagggaattgtactgtctaata-tgagaatgtactactatacttaagctattgtactacactttaagtaacttgtactgcaaggcatt 102  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16988456 ggttatttatacaagggaattgtactatctaataatgagaaagtactgctatacttaagctattgtactacactttaagtaacttgtactgcaaggcatt 16988555  T
Q  103 gcttttcttcatactttgtttcttcagattttgtattatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16988556 gcttttcttcatactttgtttcttcagattttgtattatgtaatagccccccacaagatggaggttgataaatgtctagcaaccccaacttggaaagtaa 16988655  T
Q  203 aatgtgaaaaggctgtggaaacagag 228  Q
    ||||| ||||||||||||||||||||    
T  16988656 aatgttaaaaggctgtggaaacagag 16988681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 36731131 - 36731211
Alignment:
Q  137 attatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaatgtgaaaaggctg 217  Q
    |||||| ||||||| |||||||||||||||||||||||| |||| ||| ||||||||||| | || | | |||||||||||    
T  36731131 attatgcaatagcctcccacaagatggaggttggtaaatatctaccaatcccaacttggataatagagtatgaaaaggctg 36731211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 20321837 - 20321889
Alignment:
Q  144 aatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||||||||||||||| |||||||||||||||||||| ||| | |||||||||    
T  20321837 aatagccccccacaagctggaggttggtaaatgtctaacaagctcaacttgga 20321889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 23883270 - 23883348
Alignment:
Q  139 tatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaatgtgaaaaggctg 217  Q
    |||| ||||||| |||||||| |||||||||||| || |||| ||| ||||||||||| |||||  | |||||||||||    
T  23883270 tatgcaatagcctcccacaaggtggaggttggtagatatctaccaatcccaacttggatagtaatgtatgaaaaggctg 23883348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 26498400 - 26498342
Alignment:
Q  141 tgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaag 199  Q
    ||||||| ||||||||||| |||||| ||||| ||||||| || |||||||||||||||    
T  26498400 tgtaatatccccccacaagttggagggtggtagatgtctaacatccccaacttggaaag 26498342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 15451223 - 15451163
Alignment:
Q  136 tattatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||||||||||||||||||||||||||| ||||| || || |||| ||| |||| ||||||    
T  15451223 tattatgtaatagccccccacaagatggtggttgatagatatctatcaagcccagcttgga 15451163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 26619399 - 26619478
Alignment:
Q  149 ccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaatgtgaaaaggctgtggaaacagag 228  Q
    |||||| |||| ||||||||| || ||||| | || | |||||||||| ||| |||||||||||||||| |||| |||||    
T  26619399 cccccctcaagttggaggttgatagatgtcaatcatctccaacttggatagtgaaatgtgaaaaggctgaggaagcagag 26619478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 6344856 - 6344642
Alignment:
Q  5 gttatttatacaagggaattgtactgtctaatatgagaatgtactactatacttaagctattgtactacactttaagtaacttgtactgcaaggcattgc 104  Q
    |||||||||||||  |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||             
T  6344856 gttatttatacaaatgaattgtactatcttatatgtgaatgtactactatacttaagctattgtactacattttaagtagcttgtactgca--------- 6344766  T
Q  105 ttttcttcatactttgtttcttcagattttgtattatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaa 204  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6344765 ttttcttcatgctttgtttcttcagattttgtattatgtaatagccccccacaagatggaggttggtagatgtctagcaaccccaacttggaaagtaaaa 6344666  T
Q  205 tgtgaaaaggctgtggaaacagag 228  Q
    ||| |||||||||||| |||||||    
T  6344665 tgttaaaaggctgtgggaacagag 6344642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 32622019 - 32622163
Alignment:
Q  4 ggttatttatacaagggaattgtactgtctaata-tgagaatgtactactatacttaagctattgtactacactttaagtaacttgtactgcaaggcatt 102  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32622019 ggttatttatacaagggaattgtactatctaataatgagaaagtactgctatacttaagctattgtactacactttaagtaacttgtactgcaaggcatt 32622118  T
Q  103 gcttttcttcatactttgtttcttcagattttgtattatgtaata 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32622119 gcttttcttcatactttgtttcttcagattttgtattatgtaata 32622163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 6340033 - 6339900
Alignment:
Q  5 gttatttatacaagggaattgtactgtctaatatgagaatgtactactatacttaagctattgtactacactttaagtaacttgtactgcaaggcattgc 104  Q
    |||||||||||||  |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||             
T  6340033 gttatttatacaaatgaattgtactatcttatatgtgaatgtactactatacttaagctattgtactacattttaagtagcttgtactgca--------- 6339943  T
Q  105 ttttcttcatactttgtttcttcagattttgtattatgtaata 147  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  6339942 ttttcttcatgctttgtttcttcagattttgtattatgtaata 6339900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 5918600 - 5918652
Alignment:
Q  144 aatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||||||||||||||| ||||||||||||||| |||| ||| |||| ||||||    
T  5918600 aatagccccccacaagctggaggttggtaaatatctaacaagcccagcttgga 5918652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 9606867 - 9606932
Alignment:
Q  152 cccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaatgtgaaaaggctg 217  Q
    |||||||| |||||| ||| ||||||| | ||  ||||||||||| |||||| |||||||||||||    
T  9606867 cccacaagttggaggatggcaaatgtcaatcattcccaacttggatagtaaagtgtgaaaaggctg 9606932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 14817329 - 14817257
Alignment:
Q  141 tgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaatgtgaaaag 213  Q
    ||||||| ||||||||||| ||||| ||| ||||||| || ||| ||||||||||| || | ||||| |||||    
T  14817329 tgtaatatccccccacaaggtggagattgataaatgtttatcaaacccaacttggatagaagaatgttaaaag 14817257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 14041350 - 14041268
Alignment:
Q  141 tgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaatgtgaaaaggctgtggaaa 223  Q
    ||||||| |||||||||||||||||||||||| ||||||| ||| |||||||||||||||| ||  | |||||| ||||||||    
T  14041350 tgtaatatccccccacaagatggaggttggtagatgtctaacaatcccaacttggaaagtagaagattaaaaggttgtggaaa 14041268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 22645888 - 22645832
Alignment:
Q  140 atgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||||||||||||||||||| |||| |||| |||||||||| ||| |||||||||||    
T  22645888 atgtaatagccccccacaagttggacgttgataaatgtctatcaagcccaacttgga 22645832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 14033825 - 14033775
Alignment:
Q  141 tgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaac 191  Q
    ||||||| |||||||||||||||||||||||| ||||||| ||| ||||||    
T  14033825 tgtaatatccccccacaagatggaggttggtagatgtctaacaatcccaac 14033775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 35268196 - 35268253
Alignment:
Q  139 tatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||| ||||||| |||||||| |||||||||| ||||||||| ||| |||||||||||    
T  35268196 tatgcaatagcctcccacaagttggaggttggcaaatgtctaccaatcccaacttgga 35268253  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 19799178 - 19799233
Alignment:
Q  141 tgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    ||||||| |||||| |||| |||||||||||| || |||| |||||||||||||||    
T  19799178 tgtaatatccccccgcaagttggaggttggtatatatctaacaaccccaacttgga 19799233  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 23165220 - 23165267
Alignment:
Q  149 ccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    ||||||||||| ||||||||||||||||| || |||||| ||||||||    
T  23165220 ccccccacaagttggaggttggtaaatgtttatcaaccctaacttgga 23165267  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 37736596 - 37736676
Alignment:
Q  137 attatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaatgtgaaaaggctg 217  Q
    |||||| ||||||| |||||||||||||||||||||||| |||| ||| ||||||||||| | || | | |||||||||||    
T  37736596 attatgcaatagcctcccacaagatggaggttggtaaatatctaccaatcccaacttggataatagagtatgaaaaggctg 37736676  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 52780209 - 52780150
Alignment:
Q  137 attatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||||| |||||||||||||||||||||||||||||||||| || ||| |||| ||||||    
T  52780209 attatgcaatagccccccacaagatggaggttggtaaatgtttatcaatcccatcttgga 52780150  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 9801598 - 9801655
Alignment:
Q  139 tatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||| ||||||| |||||||| ||||||||||||||| |||| ||| || ||||||||    
T  9801598 tatgcaatagcctcccacaagttggaggttggtaaatatctaccaatcctaacttgga 9801655  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 30618356 - 30618408
Alignment:
Q  149 ccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagta 201  Q
    |||| |||||| |||||||||||||||||| | || |||||||||||| ||||    
T  30618356 cccctcacaagttggaggttggtaaatgtcaaccatccccaacttggatagta 30618408  T

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Target: scaffold0329 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 13538 - 13479
Alignment:
Q  137 attatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||||| |||||||||||||||||||||||||||||||||| || ||| |||| ||||||    
T  13538 attatgcaatagccccccacaagatggaggttggtaaatgtttatcaatcccatcttgga 13479  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 620922 - 620863
Alignment:
Q  137 attatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||  || |||||||||||    
T  620922 attatgtaatatccccccacaagatggaggttgataaatgtttataaaacccaacttgga 620863  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 614529 - 614469
Alignment:
Q  137 attatgtaatagcccccc-acaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    ||||||||||| |||||| ||||||||||||||| ||||||| || ||| |||||||||||    
T  614529 attatgtaatatcccccccacaagatggaggttgataaatgtttatcaaacccaacttgga 614469  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 18550371 - 18550428
Alignment:
Q  139 tatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||| ||||||| || ||||| ||||||||||||||| |||| ||| |||||||||||    
T  18550371 tatgcaatagcctcctacaagttggaggttggtaaatatctaccaatcccaacttgga 18550428  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 44231546 - 44231490
Alignment:
Q  140 atgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||||||||||||||||||| | |||||||||| |  || |||||||| ||||||||    
T  44231546 atgtaatagccccccacaagttagaggttggtacaaatcaagcaaccctaacttgga 44231490  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 12298929 - 12298870
Alignment:
Q  137 attatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||||| |||||||||||||||||||||||||||||||| | || ||| |||| ||||||    
T  12298929 attatgcaatagccccccacaagatggaggttggtaaatttttatcaatcccatcttgga 12298870  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 19584462 - 19584521
Alignment:
Q  137 attatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||||| |||||||||||| ||||||||||||||||||||| || ||| |||| ||||||    
T  19584462 attatgcaatagccccccagaagatggaggttggtaaatgtttatcaatcccatcttgga 19584521  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 8838559 - 8838501
Alignment:
Q  141 tgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaag 199  Q
    ||||||| ||||||||||| |||||| |||||||| |||| || |||||||||||||||    
T  8838559 tgtaatatccccccacaagttggagggtggtaaatatctaacatccccaacttggaaag 8838501  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 55312495 - 55312437
Alignment:
Q  141 tgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaag 199  Q
    ||||||| ||||||||||| |||||| ||||| ||||||| || |||||||||||||||    
T  55312495 tgtaatatccccccacaagttggagggtggtagatgtctaacatccccaacttggaaag 55312437  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 44666264 - 44666320
Alignment:
Q  140 atgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    |||||||||||||||||||| | |||||||||| |  ||||||||||| ||||||||    
T  44666264 atgtaatagccccccacaagttagaggttggtacaaatctagcaaccctaacttgga 44666320  T

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Target: scaffold0209 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 27313 - 27253
Alignment:
Q  137 attatgtaatagcccccc-acaagatggaggttggtaaatgtctagcaaccccaacttgga 196  Q
    ||||||||||| |||||| ||||||||||||||| ||||||| || ||| |||||||||||    
T  27313 attatgtaatatcccccccacaagatggaggttgataaatgtttatcaaacccaacttgga 27253  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 19812489 - 19812567
Alignment:
Q  139 tatgtaatagccccccacaagatggaggttggtaaatgtctagcaaccccaacttggaaagtaaaatgtgaaaaggctg 217  Q
    |||||||||||| |||||||| |||| |||| ||||| |||| ||| ||||||||||| || ||  | |||||||||||    
T  19812489 tatgtaatagcctcccacaagttggaagttgataaatatctaccaatcccaacttggatagcaatgtatgaaaaggctg 19812567  T

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