View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7410_high_5 (Length: 310)
Name: NF7410_high_5
Description: NF7410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7410_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 3196316 - 3196158
Alignment:
| Q |
19 |
caaatactcctccaaagataaattgagtttgaaccccatgaggcctctaattaagaaatttgaacggtgagatacatggctttgaaaatctgagcaacaa |
118 |
Q |
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| T |
3196316 |
caaatactcctccaaagataaattgagtttgaaccccatgaggcctctaataaagaaatttgaacggtgagatacatagctttgaaaatctgagcaacaa |
3196217 |
T |
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| Q |
119 |
agataattcaggttacacattaaacaccaacgttgctattccttagctattctacaagg |
177 |
Q |
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| T |
3196216 |
agataattcaggttacacattaaacaccaacgttgctattccttaactattctataagg |
3196158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 168 - 301
Target Start/End: Complemental strand, 3195974 - 3195841
Alignment:
| Q |
168 |
ttctacaaggttatacatagctttaaaaatataagggtttcgaaatcccatacatccatctttcttgctcgtagataatttgtcccaaaatagccacttc |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3195974 |
ttctacaaggttatacatagctttaaaaatataagggtttcgaaatcccatacatccatctttcttgctcgtagataatttgtcccaaaatagccacttc |
3195875 |
T |
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| Q |
268 |
acacctttatttttgttaccttcattgcaccacc |
301 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
3195874 |
acacctttatttttgttcccttcattgcaccacc |
3195841 |
T |
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