View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7410_low_1 (Length: 863)
Name: NF7410_low_1
Description: NF7410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7410_low_1 |
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| [»] scaffold0015 (2 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 345 - 851
Target Start/End: Original strand, 177385 - 177891
Alignment:
| Q |
345 |
gtgttgaatcaacacttaccttacccacatgctccatcaaagaaagataaagaaaagcaatacgcaaggtttcttgagctcttcaagaaattgcaaattg |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177385 |
gtgttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaagcaatacgcaaggtttcttgagctcttcaagaaattgcaaattg |
177484 |
T |
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| Q |
445 |
acattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggagaattcatgatgaagaaaccat |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177485 |
acattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggagaattcatgatgaagaaaccat |
177584 |
T |
|
| Q |
545 |
ccaacttgatgctaattgtagtgctatcgtccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctataggcactatc |
644 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177585 |
ccaacttgatgctaattgtagtgctatcatccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctataggcactatc |
177684 |
T |
|
| Q |
645 |
aatgttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtgatttatgtatcaagcggactagga |
744 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177685 |
aatgttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtgatttatgtatcaagcggactagga |
177784 |
T |
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| Q |
745 |
tgaccttgcagttggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataaatttgtattcccggcggattttgt |
844 |
Q |
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| T |
177785 |
tgaccttgcaattggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataaatttgtattcccggcggattttgt |
177884 |
T |
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| Q |
845 |
agtgatg |
851 |
Q |
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||||||| |
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| T |
177885 |
agtgatg |
177891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 177041 - 177287
Alignment:
| Q |
1 |
tcaaaaaccttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaacccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177041 |
tcaaaaaccttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaacccaaa |
177140 |
T |
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| Q |
101 |
agggaaagagcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggtgtaggaggtgacattgaagtggagcggagggttgttgaagag |
200 |
Q |
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| T |
177141 |
agggaaagagcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggtgtaggaggtgacattgaagtggagcggagggttgttgaagag |
177240 |
T |
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| Q |
201 |
tttggtctcgaggaggatgatgttgaagtaggtagtgagaaggagct |
247 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
177241 |
tttgatctcgaggaggatgatgttgaagtaggtagtgagaaggagct |
177287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 345 - 851
Target Start/End: Original strand, 20171006 - 20171512
Alignment:
| Q |
345 |
gtgttgaatcaacacttaccttacccacatgctccatcaaagaaagataaagaaaagcaatacgcaaggtttcttgagctcttcaagaaattgcaaattg |
444 |
Q |
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||||||| ||||||||| || || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| || ||||||| |
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| T |
20171006 |
gtgttgactcaacactttccctatccacatgctccatcaaagaaagaaaaagaaaggcaatacgcaaggtttcttgaactcttcaagaagttacaaattg |
20171105 |
T |
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| Q |
445 |
acattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggagaattcatgatgaagaaaccat |
544 |
Q |
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|||||||||| ||||||||||||||||||||| || | ||||| || |||||||||||||| |||| ||||||||||| |||| |||||||||||| ||| |
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| T |
20171106 |
acattccattttcggaagccttggagcaaatgtcgtcttatgccaaattcatgaaagacattctttacaagaagaggataattaatgatgaagaaatcat |
20171205 |
T |
|
| Q |
545 |
ccaacttgatgctaattgtagtgctatcgtccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagctataggcactatc |
644 |
Q |
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|||||| ||||| ||||||||||| ||| | ||||| |||||||| |||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |
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| T |
20171206 |
ccaactcgatgcaaattgtagtgccatcattcaacgaaggttgcccaagaaagaacaagatccgggaaaagtcactttactggtagctataggcactatt |
20171305 |
T |
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| Q |
645 |
aatgttggtaaggcactacttgaccttggttcaagcataaatctcatgcctttgtccgtcgccaaaagagttggtgatttatgtatcaagcggactagga |
744 |
Q |
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||||||| || |||||||||| ||||| |||||||| || |||||||||||||| || ||||||||||||||||| || ||||| ||||||||||||| |
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| T |
20171306 |
catgttggcaaatcactacttgatcttggctcaagcatcaacctcatgcctttgtctgttgccaaaagagttggtgacttgtgtattaagcggactagga |
20171405 |
T |
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| Q |
745 |
tgaccttgcagttggccgataaatcatttgcaacaccattgggaatagccgaagatgtgcttgttaaagttgataaatttgtattcccggcggattttgt |
844 |
Q |
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|||| ||||| |||||||||||||| | ||| ||||||||||||||| || |||||||| || ||||||||||||||| | || ||| ||||||||| |
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| T |
20171406 |
tgactttgcaattggccgataaatcctacacaaaaccattgggaatagcggaggatgtgctagtgaaagttgataaatttttcttttcggtggattttgt |
20171505 |
T |
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| Q |
845 |
agtgatg |
851 |
Q |
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|||||| |
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| T |
20171506 |
ggtgatg |
20171512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 20170643 - 20170872
Alignment:
| Q |
9 |
cttgaaacacaagtgggtcaaatggctcaacacatgtctcaagccaaccaacaaggaggagcgttcaccgccaacactcaagacaacccaaaagggaaag |
108 |
Q |
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||||| |||||| |||||||||||| |||||| | |||||| || |||||||||||||||||||||| ||||||| |||| ||| |||||| |
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| T |
20170643 |
cttgagacacaaatgggtcaaatggatcaacaattagctcaagtcacccaacaaggaggagcgttcaccaccaacacacaagccaattcaaaag------ |
20170736 |
T |
|
| Q |
109 |
agcattgcaaagccataacaacaaggagtggtaaggtaattagtacgggtgtaggaggtgacattgaagtggagcggagggttgttgaagagtttggtct |
208 |
Q |
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| T |
20170737 |
aacagtgcaaagccataacaacaaggagtggtaaggtaattggtaaaggtgtaggcgatgacattgaagtggagcagaaggttgttgaagactttgatat |
20170836 |
T |
|
| Q |
209 |
cgaggaggatgatgttgaagtaggtagtgagaagga |
244 |
Q |
| |
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||| |||||| || ||| ||||||||||||||||| |
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| T |
20170837 |
cgataaggatggtgatgaggtaggtagtgagaagga |
20170872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 494
Target Start/End: Original strand, 26130847 - 26130987
Alignment:
| Q |
353 |
tcaacacttaccttacccacatgctccatcaaagaaagataaagaaaagcaatacgcaaggtttcttgagctcttcaagaaattgcaaattgacattcca |
452 |
Q |
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||||||||| || || |||||||||||| | ||||||| ||||| | |||| |||||||| ||||| | ||||||| |||| |||| | |||||| |
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| T |
26130847 |
tcaacacttgccatatccacatgctccaaccaagaaagc-aaagagcggaaatatgcaaggttccttgatattttcaagagattgaaaatcaatattcca |
26130945 |
T |
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| Q |
453 |
ttctcggaagccttggagcaaatgccggcgtatgctaagttc |
494 |
Q |
| |
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|||||||||||||||||| |||| | | |||||||| ||||| |
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| T |
26130946 |
ttctcggaagccttggagaaaattctgacgtatgcttagttc |
26130987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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