View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7410_low_10 (Length: 299)
Name: NF7410_low_10
Description: NF7410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7410_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 28607247 - 28607526
Alignment:
| Q |
1 |
tataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagcct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
28607247 |
tataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagcct |
28607346 |
T |
|
| Q |
101 |
tcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607347 |
tcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatgcatccttgcattaaa |
28607446 |
T |
|
| Q |
201 |
taggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaat |
280 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28607447 |
taggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaat |
28607526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 28612009 - 28612286
Alignment:
| Q |
1 |
tataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagcct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
28612009 |
tataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagcct |
28612108 |
T |
|
| Q |
101 |
tcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28612109 |
tcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaatgcatccttgcattaaa |
28612208 |
T |
|
| Q |
201 |
taggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28612209 |
taggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca |
28612286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 11104185 - 11104127
Alignment:
| Q |
219 |
caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaa |
279 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| ||||||||||| |||||||||||| |
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|
| T |
11104185 |
caattgcttgtagcaattgtctttggctgg--acataacccacacgtgatggggccaacaa |
11104127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 34907030 - 34906753
Alignment:
| Q |
1 |
tataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
34907030 |
tataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagcct |
34906931 |
T |
|
| Q |
101 |
tcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
34906930 |
tcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctatttgtagaaaaattcatccttgcattaaa |
34906831 |
T |
|
| Q |
201 |
taggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34906830 |
taggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca |
34906753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 8539108 - 8538832
Alignment:
| Q |
1 |
tataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagcct |
100 |
Q |
| |
|
|||||||||||| |||| ||||||||||| | |||||||| |||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |
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| T |
8539108 |
tataggggaaataagccataagagttggaaatagttcacac-ctcttacaccaaaagtcatgacattcagagtgtgaaacttggaatgaattgcaagcct |
8539010 |
T |
|
| Q |
101 |
tcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
8539009 |
tcacacttttctgcacagcaagctatgcctagccatgtctctccaccttaagctataccatagctttcctatttgtagaaaaatgcatcattgcattaaa |
8538910 |
T |
|
| Q |
201 |
taggtagaagactatttacaa-ttacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca |
278 |
Q |
| |
|
| ||||||||||| ||| || ||| || |||||||||||||||||||| |||| |||||||| ||||||||||||||| |
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| T |
8538909 |
tgagtagaagactagttataatttatttatagtaattgtctttggctgg-aacagtacccacatgtggtggggccaaca |
8538832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 130 - 278
Target Start/End: Complemental strand, 2308905 - 2308757
Alignment:
| Q |
130 |
tagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2308905 |
tagccatgtctctccaccgtaagctataccatagttttcctatttatagaaaaatacatccttgcattaaataggtagaagactatttacaattacttgt |
2308806 |
T |
|
| Q |
230 |
agtaattgtctttggctggaaacaatacccacacgtggtggggccaaca |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2308805 |
agtaattgtctttggctggaaacaatacccacacgtggtggggccaaca |
2308757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 17124087 - 17123887
Alignment:
| Q |
14 |
agccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctg |
113 |
Q |
| |
|
||||||||||||| || || ||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||||||| |
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| T |
17124087 |
agccgtaagagtttgaattagttcaca-attcttacaccaaaagtcataacattcaaagtgtgaaacttggaatgaattgcaaacattcacacttttctg |
17123989 |
T |
|
| Q |
114 |
cacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaa--aatgcatccttgcattaaataggtagaaga |
211 |
Q |
| |
|
| |||||| || ||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
17123988 |
ctaagcaagataagcctagccatgcctctccaccttaagctatactatagttttcctatttgtagaaaataatgcttccttgcattaaataaatagaaga |
17123889 |
T |
|
| Q |
212 |
ct |
213 |
Q |
| |
|
|| |
|
|
| T |
17123888 |
ct |
17123887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Complemental strand, 12935136 - 12935077
Alignment:
| Q |
219 |
caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaat |
280 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
12935136 |
caattgcttgtagcaattgtctttggctggacataa--cccacacgtggtggggccaacaat |
12935077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 17121801 - 17121733
Alignment:
| Q |
147 |
cgtaagctatatcatagctttcctatttgtaga--aaaatgcatccttgcattaaataggtagaagact |
213 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
17121801 |
cgtaagctatgccatatctttcctatttgtagaaaaaaatgcttccttgcattaaatacatagaagact |
17121733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 12930390 - 12930333
Alignment:
| Q |
219 |
caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaaca |
278 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| | || |||||||||||||||||||||| |
|
|
| T |
12930390 |
caattgcttgtagcaattgtctttggctggacataa--cccacacgtggtggggccaaca |
12930333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 51298598 - 51298522
Alignment:
| Q |
203 |
ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggccaacaa |
279 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
51298598 |
ggtagaaaactatttgcaattacttgtagtaattgtttttggccagaaacaatagccacacgtggtggggccaacaa |
51298522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 37040881 - 37040927
Alignment:
| Q |
14 |
agccgtaagagttggatttggttcacacactcttacaccaaaagtca |
60 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37040881 |
agccgtaagagttggatttggttcacacactcttacactaaaagtca |
37040927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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