View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7410_low_4 (Length: 429)
Name: NF7410_low_4
Description: NF7410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7410_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 18997852 - 18998247
Alignment:
| Q |
18 |
aatatgaggtttgttgattaattaccttgtatcacatttatctcgagaatgaagaagagtcccaataatatggcaaaacatagagccgattttgaaaatg |
117 |
Q |
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| T |
18997852 |
aatatgaggtttattgattaattaccttgtatcacatttatctcgagaatgaagaagagtcccaataatatggcaaaacatagagccgattttgaaaatg |
18997951 |
T |
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| Q |
118 |
tgggtttcatcacaccaccctatttgaagaaaaagaaacaaaaattatcagtaattcatatttccatacactaattcttgaagaatcatttgcaaagaaa |
217 |
Q |
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| T |
18997952 |
tgggtttcatcacaccaccctatttgaagaaagagaaacaaaaattatcagtaattcatatttccatacactaattcttgaagaatcatttgcaaagaaa |
18998051 |
T |
|
| Q |
218 |
tcgtcataaataaatatatatgaaaagtagattctacaatttgatatatgattaggaagctaaagtgagtgagttactgattaattaatagatgaacaga |
317 |
Q |
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| T |
18998052 |
tcgtcataaataaatatatatgaaaagtagattctacaatttgatatatgattaggaagctaaagtgagtgagttactg----attaatagatgaacaaa |
18998147 |
T |
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| Q |
318 |
ttagaggaaatcaattttatttcagagtgtaaattgattttcgaaaacaaaaagagccattaattacctgatagctaagttgatatagttacacaatatt |
417 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18998148 |
ttagaggaaatcaattttatttcagagtttaaattgattttcgaaaactaaaagagccattaattacctgatagctaagttgatatagttatacaatatt |
18998247 |
T |
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