View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7410_low_6 (Length: 316)
Name: NF7410_low_6
Description: NF7410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7410_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 5047997 - 5048140
Alignment:
| Q |
1 |
cactttcttttactctttctagagcttgtacaattttatcttggaattttttgatctggaccttgctgattgccatagctcgagggtgatatgaagttga |
100 |
Q |
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| T |
5047997 |
cactttcttttactctttctagagcttgtacaattttatcttggaattttttgatctggaccttgctgattgccatagctcgagggtgatatgaagttga |
5048096 |
T |
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| Q |
101 |
cacccacgtgcacatgacaccaggcccacataatcatctatgtc |
144 |
Q |
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| T |
5048097 |
cccccacgtgcacatgacaccaggcccacataatcatctatgtc |
5048140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 5048195 - 5048297
Alignment:
| Q |
199 |
ctagttgtgaaaattattgatggttgttaattaccatttcaattatttcattcatcacttattattacactctagtttctttggttctgtctggcattta |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| |||||| |
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| T |
5048195 |
ctagttgtgaaaattattgatggttgttaattaccatttcaattatttcattcatcacttattattacactgtagtttctttagttgtgtctgacattta |
5048294 |
T |
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| Q |
299 |
atg |
301 |
Q |
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||| |
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| T |
5048295 |
atg |
5048297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 12831852 - 12831804
Alignment:
| Q |
252 |
atcacttattattacactctagtttctttggttctgtctggcatttaat |
300 |
Q |
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| T |
12831852 |
atcacttattattacactgtaatttctttggttctgtctggcatttaat |
12831804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 12863827 - 12863779
Alignment:
| Q |
252 |
atcacttattattacactctagtttctttggttctgtctggcatttaat |
300 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
12863827 |
atcacttattattacactgtaatttctttggttctgtctggcatttaat |
12863779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 20510153 - 20510201
Alignment:
| Q |
252 |
atcacttattattacactctagtttctttggttctgtctggcatttaat |
300 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
20510153 |
atcacttattattacactgtaatttctttggttctgtctggcatttaat |
20510201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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