View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7411_high_12 (Length: 280)
Name: NF7411_high_12
Description: NF7411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7411_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 328725 - 328462
Alignment:
| Q |
1 |
tgaaattattaatagcttggagatgaagtaactcaccttcacagtgagtatatccatcaccaacaaactttacattttgtacaatagggcattcacacac |
100 |
Q |
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| T |
328725 |
tgaaattattaatagcttggagatgaagtaactcaccttcacagtgagtatatccatcaccaacaaactttacattttgtacaatagggcattcacacac |
328626 |
T |
|
| Q |
101 |
tcttcctcgaaaagtgtcctattattaagaatatcatcaccaatcacaacatggatattaaaatagagtaatttgaaaatatttaacaaaaatgtatcaa |
200 |
Q |
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| T |
328625 |
tcttcctcgaaaagtgtcctattattaagaatatcatcaccaatcacaacatggatattaaaatagagtaatttgaaaatatttaacaaacatgtatcaa |
328526 |
T |
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| Q |
201 |
acaggattgagttagccaaataccctgcatgcagtaatgttggcagctttgtcctgccaacaac |
264 |
Q |
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| T |
328525 |
acaggattgagttagccaaataccctgcatgcagtaatgttggcagctttgtcctgccaacaac |
328462 |
T |
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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 27412108 - 27412200
Alignment:
| Q |
35 |
accttcacagtgagtatatccatcaccaacaaactttacattttgtacaatagggcattcacacactcttcctcgaaaagtgtcctattatta |
127 |
Q |
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| T |
27412108 |
accttcacagtgagtatatccatcgccaacaaacttaatattgtttacaacagggcatacacatactcttcctcggaaagtgtcctataatta |
27412200 |
T |
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