View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7411_high_14 (Length: 266)
Name: NF7411_high_14
Description: NF7411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7411_high_14 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 329090 - 328839
Alignment:
| Q |
15 |
tatcaaaatgtcactggcatatatatttgtcatgcactatacaatggaatgtttaaaacaaatttagtacctttacaggagcggactccatcacccctga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
329090 |
tatcaaaatgtcactggcatatatatttgtcatgcactatacaatggaatgtttaaaacaaatttagtacctttacaggagtggactccatcacccctga |
328991 |
T |
|
| Q |
115 |
atccaggtggacacttgcaaccttttgtacggtcatcctgcattatcaattcagaaacaaaagatatataatcaaaataatcatgtatgtatatgaaagg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
328990 |
atccaggtggacacttgcaaccttttgtacggtcatcctgcattatcaattcagaaacaaaagatatataatcaaaataatcatatatgtatatgaaagg |
328891 |
T |
|
| Q |
215 |
atgcagatgaggagaggactacttacgatacaagcagagtaagccctgccac |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
328890 |
atgcagatgaggagaggactacttacgatacaagcagagtaagccctgccac |
328839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 27411534 - 27411625
Alignment:
| Q |
83 |
acctttacaggagcggactccatcacccctgaatccaggtggacacttgcaaccttttgtacggtcatcctgcattatcaattcagaaacaa |
174 |
Q |
| |
|
||||| ||| || |||||||| ||||| ||||| || | || |||| |||||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
27411534 |
accttcacatgaccggactccgtcacctctgaaccctgacgggcactcgcaaccttttctatagtcatcctgcattatcaattaagaaacaa |
27411625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University