View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7411_high_15 (Length: 249)
Name: NF7411_high_15
Description: NF7411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7411_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 43174821 - 43174957
Alignment:
| Q |
8 |
cgaagaatatgcatgacacaatttgttcattttgttttttagcaatatctttggaaaaacattaaaagag--nnnnnnnnnagagtttcattttaaaata |
105 |
Q |
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| T |
43174821 |
cgaacaatatgcatgacacaatttgttcattttgttttttagcaatatctttggaaaaacattaaaagagtttttttttttagagtttcattttaaaata |
43174920 |
T |
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| Q |
106 |
tggttgtatagtgtgacagaattacaaaatcatgtag |
142 |
Q |
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| T |
43174921 |
tggttgtatagtgtgacagaattacaaaatcatgtag |
43174957 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 43175023 - 43175064
Alignment:
| Q |
208 |
gaataagtttagggaagaggattattatttatttactccatt |
249 |
Q |
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| T |
43175023 |
gaataagtttaaggaagaggattattatttatttactccatt |
43175064 |
T |
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