View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7411_high_17 (Length: 238)
Name: NF7411_high_17
Description: NF7411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7411_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43175067 - 43175286
Alignment:
| Q |
1 |
tactcaattaattaacaagtacaagagatttatgatgataaccataataataagctcttgcctcagaacagaactttgctttcatcttttttataaaatc |
100 |
Q |
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| T |
43175067 |
tactcaattaattaacaaggacaagagatttatgatgataaccataataataagctcttgcctcagaacagaactttgctttcatcttttttataaaatc |
43175166 |
T |
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| Q |
101 |
ctcacatttcttgttcaattcctctgtctcatgatcttcatcaatgatcataagagaattttcctcctctttatcttcttttgcatcagaaatcatcatt |
200 |
Q |
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| T |
43175167 |
ctcacatttcttgttcaattcttgtgtctcatgatcttcatcaatgatcataagagaattttcctcctctttatcttcttttgcatcagaaatcatcatt |
43175266 |
T |
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| Q |
201 |
ttatctggctcataagatat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
43175267 |
ttatctggctcataagatat |
43175286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 43310217 - 43310169
Alignment:
| Q |
78 |
gctttcatcttttttataaaatcctcacatttcttgttcaattcctctg |
126 |
Q |
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| T |
43310217 |
gctttcatctttttaataaaatcctcacatttcttgttcaattcctctg |
43310169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 43168062 - 43167988
Alignment:
| Q |
78 |
gctttcatcttttttataaaatcctcacatttcttgttcaattcctctgtctcatgatcttcatcaatgatcataaga |
155 |
Q |
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| T |
43168062 |
gctttcatctttttgataaaatcctcacatttcttgtttaattcttctgtttc---atcttcatcaattatcctaaga |
43167988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 43154833 - 43154948
Alignment:
| Q |
53 |
agctcttgcctcagaacagaactttgctttcatcttttttataaaatcctcacatttcttgttcaattcctctgtctcatgatcttcatcaatgatcata |
152 |
Q |
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|||||||| ||| ||||||| | |||||||| ||||| |||||||||||||||||||| || | || ||||||||| ||||| |||||| |||||| |
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| T |
43154833 |
agctcttgaatcataacagaaagtagctttcatttttttgataaaatcctcacatttcttatttagtttctctgtctc---atctttatcaattatcata |
43154929 |
T |
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| Q |
153 |
agagaattttcctcctctt |
171 |
Q |
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|| ||||||||| |||| |
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| T |
43154930 |
ggatcattttcctcttctt |
43154948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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