View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7411_high_2 (Length: 647)
Name: NF7411_high_2
Description: NF7411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7411_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 16 - 646
Target Start/End: Complemental strand, 35682058 - 35681431
Alignment:
| Q |
16 |
atttaggtgactttgaaagcaagaaacgggaaagcatttcaaataaggaagtcttttgatagataagtggagaaagtaaaaa-taactttgtagaactag |
114 |
Q |
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| T |
35682058 |
atttaggtgactttgaaagcaagaaaccggaaggtatttcaaataaggaagtcttttgatagataagtggagaaagtaaaaaataactttgtagaactag |
35681959 |
T |
|
| Q |
115 |
ctgaggtttaaaaacaaagggattctgttatcaaataacacaatggtgtgaggaaatcttttaacattatgcagtaggataccatgatcttggaaatcct |
214 |
Q |
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| T |
35681958 |
ctgagttttaaaaacaaagggattctgttatgaaataacacaatggtgtgaggaaatcttttaacattatgcagtaggataccatgatcttgaaaatcct |
35681859 |
T |
|
| Q |
215 |
ttatcctgtctgtcttatttgcgcatgacatttatttattctacaatagtctcatcaagcaccaatccatgtttcaatcataactagaaggagaaaagta |
314 |
Q |
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| T |
35681858 |
ttatcctgtct----tatttgcgcatgacatttatttattctacaatagtctcatcaagcaccaatccatgtttcaatcataactagaaggagaaaagta |
35681763 |
T |
|
| Q |
315 |
cacaatgtgaccacagtctcttattttacgagtctccttcccaacaaattccagccgcttcaaatcgtttcggtaaaactccacacacttgcctaacaac |
414 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681762 |
cacaatgtggccacagtctcttattttacgagtctccttcccaagaaattccagccgcttcaaatcgtttcggtaaaactccacacacttgcctaacaac |
35681663 |
T |
|
| Q |
415 |
acacacaatgcacaaccaaacttcaagtgtgtttggctaggaaagcaaggataagctgattcaactgttcaggaaattgttcttgaacaaaatgagttcc |
514 |
Q |
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| T |
35681662 |
gcacacaatgcacaaccaaacttcaagtgtgtttggctaggaaagcaaggataagctgattcaactgttcaggaaattgttcttgaacaaaatgagttcc |
35681563 |
T |
|
| Q |
515 |
ctctggaatatatgtaacctccaaattgggaacaagctctttcgtcttttcactttttattaaatcttcaatgcctggaaacttgaaaacataatccttt |
614 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35681562 |
ctctggaataaatgtaacctccaaattgggaacaagctctttcgtcttttcactttttattaaatcttcaatgcctggaaacttgaaaacataatccttt |
35681463 |
T |
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| Q |
615 |
ccacccattataagcagtgttggaactttgac |
646 |
Q |
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| T |
35681462 |
ccacccattatcagcagtgttggaactttgac |
35681431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 423 - 646
Target Start/End: Complemental strand, 35665627 - 35665404
Alignment:
| Q |
423 |
tgcacaaccaaacttcaagtgtgtttggctaggaaagcaaggataagctgattcaactgttcaggaaattgttcttgaacaaaatgagttccctctggaa |
522 |
Q |
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||||| ||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
35665627 |
tgcacgaccaaacttcaagtgtgtttggcaaggaagtcaaggataagttgattcacctgttcgggaaattgttcttgaacaaaatgtgttccctctggaa |
35665528 |
T |
|
| Q |
523 |
tatatgtaacctccaaattgggaacaagctctttcgtcttttcactttttattaaatcttcaatgcctggaaacttgaaaacataatcctttccacccat |
622 |
Q |
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|| |||||||||||| |||||||||||||||||| | |||||||| || ||||||| ||||| |||||||||||||||||||||||||| |||||||| |
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| T |
35665527 |
taaatgtaacctccagattgggaacaagctctttagccttttcacccttagttaaatcctcaatccctggaaacttgaaaacataatccttgccacccat |
35665428 |
T |
|
| Q |
623 |
tataagcagtgttggaactttgac |
646 |
Q |
| |
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||| || | || |||||||||||| |
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| T |
35665427 |
tatcagtaatgctggaactttgac |
35665404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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