View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7411_low_10 (Length: 300)
Name: NF7411_low_10
Description: NF7411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7411_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 14977913 - 14977646
Alignment:
| Q |
18 |
tgcaaaaccttccttttctcaagtgtagacttaagcctaaaggcaaatcctttaacatttgaaacaccaccaccacaaccatctttcttatactcagaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14977913 |
tgcaaaaccttccttttctcaagtgtagacttaagcctaaaggcaaatcctttaccatttgaaacaccaccaccacaaccatctttcttatactcagaca |
14977814 |
T |
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| Q |
118 |
attcttcatcagccaattgacaattaggaagagaattaactttagcatatctacacaacaaagagtaaagtgcaaaagtgcctccttcaccattatcatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14977813 |
attcttcatcagccaattgacaattaggaagagaattaactttagcatatctacacaacaaagagtaaagtgcaaaagtgcctccttcaccattatcatc |
14977714 |
T |
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| Q |
218 |
agctcttaacactatgaacacatatttaaccaaaggaactaatgtaacagaccaaaacaccaaagaca |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14977713 |
agctcttaacactatgaacacatatttaaccaaaggaactaatgtaacagaccaaaacaccagagaca |
14977646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 15028009 - 15027763
Alignment:
| Q |
18 |
tgcaaaaccttccttttctcaagtgtagacttaagcctaaaggcaaatcctttaacatttgaaacaccaccaccacaaccatctttcttatactcagaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15028009 |
tgcaaaaccttccttttctcaagtgtagacttaagcctaaaggcaaatcctttaccatttgaaacaccaccaccacaaccatctttcttatactcagaca |
15027910 |
T |
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| Q |
118 |
attcttcatcagccaattgacaattaggaagagaattaactttagcatatctacacaacaaagagtaaagtgcaaaagtgcctccttcaccattatcatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15027909 |
attcttcatcagccaattgacaattaggaagagaattaactttagcatatctacacaacaaagagttaagtgcaaaagtgcctccttcaccattatcatc |
15027810 |
T |
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| Q |
218 |
agctcttaacactatgaacacatatttaaccaaaggaactaatgtaa |
264 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15027809 |
agctcttaacactatgaacacatatttaaccaaagaaactaatgtaa |
15027763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 1808117 - 1808033
Alignment:
| Q |
160 |
tagcatatctacacaacaaagagtaaagtgcaaaagtgcctccttcaccattatcatcagctcttaacactatgaacacatattt |
244 |
Q |
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|||||| |||||| | ||||||||| | |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
1808117 |
tagcatgtctacatagcaaagagtacaaagcaaaagtccctccttcaccattatcatcagctctcaacacaatgaacacatattt |
1808033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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