View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7411_low_18 (Length: 201)

Name: NF7411_low_18
Description: NF7411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7411_low_18
NF7411_low_18
[»] chr3 (1 HSPs)
chr3 (49-185)||(1915780-1915917)
[»] chr8 (2 HSPs)
chr8 (14-153)||(15657632-15657772)
chr8 (97-144)||(37003059-37003106)
[»] chr7 (1 HSPs)
chr7 (49-185)||(37066385-37066522)
[»] chr6 (1 HSPs)
chr6 (29-144)||(22274711-22274826)
[»] chr5 (1 HSPs)
chr5 (29-158)||(28827788-28827918)
[»] chr1 (1 HSPs)
chr1 (56-185)||(50443390-50443520)
[»] chr2 (2 HSPs)
chr2 (100-158)||(39574336-39574395)
chr2 (29-80)||(39574304-39574355)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 1915917 - 1915780
Alignment:
Q  49 aaaacatagtattaggtgagggtagagagagagaacgacggaaaacacgtttaggtgagggtagagagagaacgacggcgagaaattcgccgg-aaagag 147  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1915917 aaaacagagtattaggtgacggtagagagagagaacgacggaaaacacgtttaggtgagggtagagagagaacgacggcgagaaattcgccggaaaagag 1915818  T
Q  148 aagtggtcgccgttttgtgctagctgttggtgaggaac 185  Q
    |||||| |||||||||||||||||||||||||||||||    
T  1915817 aagtggccgccgttttgtgctagctgttggtgaggaac 1915780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 15657772 - 15657632
Alignment:
Q  14 atgaaaacagagtatgggtatggagagaaaacacaaaaacatagtattaggtgagggtagagagagagaacgacggaaaacacgtttaggtgagggtaga 113  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15657772 atgaaaacagagtatgggtatggagagaaaacacgaaaacagagtattaggtgagggtagagagagagaacgacgaaaaacacgtttaggtgagggtaga 15657673  T
Q  114 gagagaacgacggcgagaaattcgccgg-aaagagaagtgg 153  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  15657672 gagagaacgacggcgagaaattcaccggaaaagagaagtgg 15657632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 37003059 - 37003106
Alignment:
Q  97 gtttaggtgagggtagagagagaacgacggcgagaaattcgccggaaa 144  Q
    ||||||||||||| |||||| ||||||||||||||| || ||||||||    
T  37003059 gtttaggtgagggaagagagtgaacgacggcgagaactttgccggaaa 37003106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 49 - 185
Target Start/End: Original strand, 37066385 - 37066522
Alignment:
Q  49 aaaacatagtattaggtgagggtagagagagagaacgacggaaaacacgtttaggtgagggtagagagagaacgacggcgagaaattcgccgg-aaagag 147  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37066385 aaaacagagtattaggtgatggtagagagagataacgacggaaaacacgtttaggtgagggtagagagagaacgacggcgagaaattcgccggaaaagag 37066484  T
Q  148 aagtggtcgccgttttgtgctagctgttggtgaggaac 185  Q
    ||||||  ||||||||||||||||||||||||||||||    
T  37066485 aagtggctgccgttttgtgctagctgttggtgaggaac 37066522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 22274826 - 22274711
Alignment:
Q  29 gggtatggagagaaaacacaaaaacatagtattaggtgagggtagagagagagaacgacggaaaacacgtttaggtgagggtagagagagaacgacggcg 128  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22274826 gggtatggagagaaaacacgaaaacaaagtattaggtgagggtagagagagagaacgacagaaaacacgtttaggtgagggtagagagagaacgacggcg 22274727  T
Q  129 agaaattcgccggaaa 144  Q
    ||||||||||||||||    
T  22274726 agaaattcgccggaaa 22274711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 4e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 28827918 - 28827788
Alignment:
Q  29 gggtatggagagaaaacacaaaaacatagtattaggtgagggtagagagagagaacgacggaaaacacgtttaggtgagggtagagagagaacgacggcg 128  Q
    ||||||||| ||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28827918 gggtatggaaagaaaacacgaaaacagagtaataggtgagggtagagagagagaatgacggaaaacacgtttaggtgagggtagagagagaacgacggcg 28827819  T
Q  129 agaaattcgccgg-aaagagaagtggtcgcc 158  Q
    ||||||||||||| |||||||||||| ||||    
T  28827818 agaaattcgccggaaaagagaagtggccgcc 28827788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 4e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 50443520 - 50443390
Alignment:
Q  56 agtattaggtgagggtagagagagagaacgacggaaaacacgtttaggtgagggtagagagagaacgacggcgagaaattcgccgg-aaagagaagtggt 154  Q
    |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||     
T  50443520 agtattaggtgacggtagagagatagaacgacggaaaacatgtttaggtgagggtagagagagaacaacggcgagaaattcgccggaaaagagaagtggc 50443421  T
Q  155 cgccgttttgtgctagctgttggtgaggaac 185  Q
     ||||||||||||||||||||||||||||||    
T  50443420 tgccgttttgtgctagctgttggtgaggaac 50443390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 39574336 - 39574395
Alignment:
Q  100 taggtgagggtagagagagaacgacggcgagaaattcgccgg-aaagagaagtggtcgcc 158  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39574336 taggtgagggtagagagagaacgacggcgagaaattcgccggaaaagagaagtggccgcc 39574395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 39574304 - 39574355
Alignment:
Q  29 gggtatggagagaaaacacaaaaacatagtattaggtgagggtagagagaga 80  Q
    ||||||||| ||||||||| |||||| |||| ||||||||||||||||||||    
T  39574304 gggtatggaaagaaaacacgaaaacagagtaataggtgagggtagagagaga 39574355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University