View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7411_low_3 (Length: 607)
Name: NF7411_low_3
Description: NF7411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7411_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 7 - 589
Target Start/End: Original strand, 5043710 - 5044290
Alignment:
| Q |
7 |
tttggtgttagtgaagactcaatcatatcaaagatgatgaaataagcaaggttatacttttttgaattttgaccatagaaaaagtgggnnnnnnngcaaa |
106 |
Q |
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| T |
5043710 |
tttggtgttagtgaagactcaatcatatcaaagatgatgaaataagcaaggttatacttttttgaattttgaccatagaaaaagtgggaaaaaaagcaaa |
5043809 |
T |
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| Q |
107 |
agcaataaactttgtccctttgacagcattttcattcaaccttccttttctttcccacacgcttcttatccttccacactttctacacactcttcaattc |
206 |
Q |
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| T |
5043810 |
agcaataaactttgtccctttgacagcattttcattcaaccttccttttctttcccacacgcttcttatccttccacactttctgcacactcttcaattc |
5043909 |
T |
|
| Q |
207 |
atcaaaccnnnnnnntaaacattcattttttagagggtattcaacaatgctttcatatgagattgataatccattgatgggttttgaaacatctttcaaa |
306 |
Q |
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| T |
5043910 |
atcaaaccaaaaaa--aaacattcattttttagagggtattcaacaatgctttcgtatgagatggataatccattgatgggttttgaaacatctttcaaa |
5044007 |
T |
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| Q |
307 |
ggttgtttttctagtgtcttagacactgaaaaaatggatctcaagttgataattgaagagcttgattcaattgatgatgttccttatgtgtttatatgtc |
406 |
Q |
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| T |
5044008 |
ggttgtttttctagtgtcttagacactgaaaaaatggatctcaagttgataattgaagagcttgattcaattgatgatgttccttatgtgtttatatgtc |
5044107 |
T |
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| Q |
407 |
caatctcacttgaaccaatgcaagagcctgttacactatgcacaggtcaaacctatgatagatccaacatccttaaatggttttcacttggccacaaaac |
506 |
Q |
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| T |
5044108 |
caatctcacttgaaccaatgcaagagcctgttacactatgcacaggtcaaacctatgatagatccaacatccttaaatggttttcacttggtcacaaaac |
5044207 |
T |
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| Q |
507 |
atgtccaacaacaatgcaagagttatgggatgattcaatcactcccaacaacactctcaaacaattgatctttacttggttct |
589 |
Q |
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| T |
5044208 |
atgtccaacaacaatgcaagagttatgggatgattcaatcactcccaacaacactctcaaacaattgatctttacttggttct |
5044290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 405 - 549
Target Start/End: Complemental strand, 20004842 - 20004698
Alignment:
| Q |
405 |
tccaatctcacttgaaccaatgcaagagcctgttacactatgcacaggtcaaacctatgatagatccaacatccttaaatggttttcacttggccacaaa |
504 |
Q |
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| T |
20004842 |
tccaatctcacttgaaccaatgcaggaacatgtgaccctttgtactggtcagacctttaacagatccaacatcctgaaatggttctcacttggtcacaaa |
20004743 |
T |
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| Q |
505 |
acatgtccaacaacaatgcaagagttatgggatgattcaatcact |
549 |
Q |
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| T |
20004742 |
acttttcccgcaataatacaagatatatgggatgattcagtcact |
20004698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 556
Target Start/End: Complemental strand, 5238168 - 5238015
Alignment:
| Q |
403 |
tgtccaatctcacttgaaccaatgcaagagcctgttacactatgcacaggtcaaacctatgatagatccaacatccttaaatggttttcacttggccaca |
502 |
Q |
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|||||||| || ||||||||||||||||| |||||||| || ||||| || ||||||||||| || |||||| || ||||||||| | || ||| |
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| T |
5238168 |
tgtccaatttctcttgaaccaatgcaagaccctgttactctttgcactggacaaacctatgagaggaacaacattctcaaatggtttaatatgggacact |
5238069 |
T |
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| Q |
503 |
aaacatgtccaacaacaatgcaagagttatgggatgattcaatcactcccaaca |
556 |
Q |
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|| ||||| ||||| ||||||||| | ||||||||||| |||||||| |||| |
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| T |
5238068 |
ttacttgtcctacaactatgcaagagctttgggatgattccatcactccaaaca |
5238015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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