View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7411_low_7 (Length: 339)
Name: NF7411_low_7
Description: NF7411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7411_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 94 - 277
Target Start/End: Complemental strand, 23385652 - 23385469
Alignment:
| Q |
94 |
cataatagtgaaggagatcatccaaatgtgagtgctagaaagtttattgaaaataaagtataattaactctattcttaaatgtgagtgctcctcctcaag |
193 |
Q |
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| T |
23385652 |
cataatagtgaaggagatcatccaaatgtgagtgctagaaagagtattgaaaataaagcatacttaactctattcttaaatgtgagtgctcctcctcaag |
23385553 |
T |
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| Q |
194 |
atcaatgttagagtgagtgatgaaaataaagcatccttaactctcttcttaaatgtgtgtgttactcctcaaagtcacaggttc |
277 |
Q |
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| T |
23385552 |
atcaatgttagagtgagtgatgaaaataaagcatccttaactctcttcttaaatgtgagtgttactcctcaaggtcacaggttc |
23385469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 23385749 - 23385717
Alignment:
| Q |
25 |
ttcctcacgtctaagactaaacatttggagcat |
57 |
Q |
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| T |
23385749 |
ttcctcacgtctaagactaaacatttggagcat |
23385717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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