View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7411_low_8 (Length: 326)

Name: NF7411_low_8
Description: NF7411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7411_low_8
NF7411_low_8
[»] chr4 (6 HSPs)
chr4 (108-313)||(49583081-49583286)
chr4 (23-107)||(49583343-49583427)
chr4 (115-240)||(5198998-5199124)
chr4 (148-232)||(4848615-4848699)
chr4 (108-185)||(15522606-15522683)
chr4 (217-286)||(29866154-29866223)
[»] chr5 (3 HSPs)
chr5 (173-294)||(37247603-37247723)
chr5 (221-264)||(27983524-27983567)
chr5 (148-247)||(31898075-31898172)
[»] chr2 (1 HSPs)
chr2 (217-294)||(5430280-5430357)
[»] chr8 (2 HSPs)
chr8 (148-239)||(7411339-7411429)
chr8 (176-244)||(3424305-3424372)
[»] chr6 (2 HSPs)
chr6 (171-246)||(6134221-6134296)
chr6 (182-242)||(2721839-2721899)
[»] chr1 (6 HSPs)
chr1 (167-287)||(26828549-26828669)
chr1 (226-298)||(34664919-34664991)
chr1 (127-195)||(35811949-35812017)
chr1 (108-157)||(16424901-16424950)
chr1 (223-259)||(14081707-14081743)
chr1 (148-188)||(32900378-32900418)


Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 108 - 313
Target Start/End: Complemental strand, 49583286 - 49583081
Alignment:
Q  108 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583286 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataat 49583187  T
Q  208 taatttttataagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcgacatcttaa 307  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49583186 taatttttataagacttatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcgacatcttaa 49583087  T
Q  308 cgcaac 313  Q
    ||||||    
T  49583086 cgcaac 49583081  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 49583427 - 49583343
Alignment:
Q  23 gcattcacctgtccaaaaatttaaatatatttaaagggagcatatatatacaatagttggttttaaggcaaattgagtttgctct 107  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  49583427 gcattcacctgtccaaaaatttaaatatatttaaagatagcatatatttacaatagttggttttaaggaaaattgagtttgctct 49583343  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 5199124 - 5198998
Alignment:
Q  115 aaattcattactaaattatgaaaataattacacta-tgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaattt 213  Q
    ||||||||||| |||||||||||| ||||| | || |||||||| ||||||| |||||||||||||| ||||||||| |||| |||| ||||| ||||||    
T  5199124 aaattcattacaaaattatgaaaagaattatagtaatgaaattatgaagaaacaatgagaaattaagttattatacattatatgataatataaataattt 5199025  T
Q  214 ttataagaattatgcaatgttgtgatt 240  Q
    | |||| | || ||||||||| |||||    
T  5199024 taataatatttgtgcaatgttatgatt 5198998  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 4848615 - 4848699
Alignment:
Q  148 tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatg 232  Q
    |||||||||| ||||||| |||||||||||||| ||||||||| |||| |||||||||| ||||||| |||| | || |||||||    
T  4848615 tatgaaattatgaagaaacaatgagaaattaagttattatacattatatgatagtataaataattttaataatatttgtgcaatg 4848699  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 15522683 - 15522606
Alignment:
Q  108 aagaaataaattcattactaaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctatt 185  Q
    |||||| |||||||||||  ||| ||||||||||||||| ||| |||||| ||| ||| ||| |||||||||| ||||    
T  15522683 aagaaacaaattcattacataataatgaaaataattacattataaaattatgaataaacaataagaaattaagttatt 15522606  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 29866154 - 29866223
Alignment:
Q  217 taagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaaca 286  Q
    ||||| || |||||||||||||||||||||| |  |||||||||||||  | || |||||||| ||||||    
T  29866154 taagatttgtgcaatgttgtgattaattcacaccacgacaaccacaatctgtaacgcaacatcagtaaca 29866223  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 37247603 - 37247723
Alignment:
Q  173 aaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatg 272  Q
    |||||||| ||||||||| |||| ||||| |||| | ||||  |||| | || |||| ||||||||||||||||| | ||||||||||||||  | || |    
T  37247603 aaattaagttattatacactatatgatagaataaatgattta-ataatatttgtgcattgttgtgattaattcacaccgcgacaaccacaatctgtaacg 37247701  T
Q  273 caacatctgtaacaatcgaaat 294  Q
    ||||||| |||||| |||||||    
T  37247702 caacatccgtaacactcgaaat 37247723  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 27983567 - 27983524
Alignment:
Q  221 aattatgcaatgttgtgattaattcacgctgcgacaaccacaat 264  Q
    |||| |||||||||||||||||||||| ||||||| ||||||||    
T  27983567 aattgtgcaatgttgtgattaattcaccctgcgacgaccacaat 27983524  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 31898075 - 31898172
Alignment:
Q  148 tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaattcac 247  Q
    |||||||||| ||| ||| | |||||||||||||||||| ||| |||  ||||||||||  |||||| |  | | ||||| ||| |||||||||||||||    
T  31898075 tatgaaattatgaacaaacagtgagaaattaagctattaaacattat--gatagtataaagaattttaaccacatttatggaatattgtgattaattcac 31898172  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 5430280 - 5430357
Alignment:
Q  217 taagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaat 294  Q
    ||||| || |||||| ||||||||||||||| | ||||||||||||||  | ||||||||||| ||||||| ||||||    
T  5430280 taagagttgtgcaatattgtgattaattcacaccgcgacaaccacaatctgtaatgcaacatccgtaacaaccgaaat 5430357  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 7411429 - 7411339
Alignment:
Q  148 tatgaaattaagaagaaataatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgat 239  Q
    |||||||  ||||||||| ||| |||||||||| ||||||||| |||||||||  |||| ||||||| |||||| || || |||||||||||    
T  7411429 tatgaaaagaagaagaaacaat-agaaattaagttattatacattataagatatcataaataattttaataagatttgtgaaatgttgtgat 7411339  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 3424372 - 3424305
Alignment:
Q  176 ttaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaatt 244  Q
    ||||| ||||||||| |||| |||||||||| ||||||||||||  ||| |||| ||||||||||||||    
T  3424372 ttaagttattatacattatatgatagtataaataatttttataa-tattgtgcattgttgtgattaatt 3424305  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 6134296 - 6134221
Alignment:
Q  171 agaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaattca 246  Q
    |||||| ||| ||||||||| |||  |||||||||| | ||||| |||||| || |||||||||||||||||||||    
T  6134296 agaaatcaagttattatacattatttgatagtataaatgattttaataagatttgtgcaatgttgtgattaattca 6134221  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 2721839 - 2721899
Alignment:
Q  182 tattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaa 242  Q
    ||||||||| |||| |||||||||| ||||||| |||| | |||||||| |||||||||||    
T  2721839 tattatacattatatgatagtataaataattttaataatatttatgcaaggttgtgattaa 2721899  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 287
Target Start/End: Original strand, 26828549 - 26828669
Alignment:
Q  167 aatgagaaattaagctattatacaatataagatagtataattaatttttataagaattatgcaatgttgtgattaattcacgctgcgacaaccacaatgc 266  Q
    |||||||||||||| | ||  ||| |||| | |||||||| ||| ||| |||| | || ||||||||||||||||||| || | |||||||  |||||      
T  26828549 aatgagaaattaagttttttcacattatatgttagtataaataagtttaataaaatttgtgcaatgttgtgattaatttacaccgcgacaataacaatct 26828648  T
Q  267 gcaatgcaacatctgtaacaa 287  Q
    | |||||||||||| ||||||    
T  26828649 gtaatgcaacatctataacaa 26828669  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 34664919 - 34664991
Alignment:
Q  226 tgcaatgttgtgattaattcacgctgcgacaaccacaatgcgcaatgcaacatctgtaacaatcgaaattgcg 298  Q
    ||||||||||| |||||||||  | | |||||||||||| |  ||||||||||| ||||||| ||||||||||    
T  34664919 tgcaatgttgtaattaattcataccgtgacaaccacaatccataatgcaacatccgtaacaaccgaaattgcg 34664991  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 35811949 - 35812017
Alignment:
Q  127 aaattatgaaaataattacactatgaaattaagaagaaataatgagaaattaagctattatacaatata 195  Q
    |||||||  ||| ||||||| |||| ||||||||||||| | |||||||||||| ||||||||| ||||    
T  35811949 aaattattgaaagaattacattatggaattaagaagaaacagtgagaaattaagttattatacattata 35812017  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 16424950 - 16424901
Alignment:
Q  108 aagaaataaattcattactaaattatgaaaataattacactatgaaatta 157  Q
    |||||| ||||||||||| |||||| |||||||||| || ||||||||||    
T  16424950 aagaaacaaattcattacaaaattaagaaaataatttcattatgaaatta 16424901  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 14081743 - 14081707
Alignment:
Q  223 ttatgcaatgttgtgattaattcacgctgcgacaacc 259  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  14081743 ttatgcaatgttgtgattaatgcacactgcgacaacc 14081707  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 32900378 - 32900418
Alignment:
Q  148 tatgaaattaagaagaaataatgagaaattaagctattata 188  Q
    |||||||||| ||||||| |||||||||||||| |||||||    
T  32900378 tatgaaattatgaagaaacaatgagaaattaagttattata 32900418  T

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