View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7412_high_1 (Length: 268)

Name: NF7412_high_1
Description: NF7412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7412_high_1
NF7412_high_1
[»] chr2 (24 HSPs)
chr2 (23-258)||(24168506-24168741)
chr2 (47-197)||(34906357-34906508)
chr2 (74-197)||(16739370-16739494)
chr2 (23-245)||(21485182-21485406)
chr2 (74-158)||(34948531-34948615)
chr2 (82-254)||(5464285-5464460)
chr2 (82-197)||(5938366-5938482)
chr2 (74-157)||(43333864-43333947)
chr2 (47-197)||(15113305-15113455)
chr2 (82-155)||(41961751-41961824)
chr2 (23-111)||(13278683-13278771)
chr2 (23-111)||(6404105-6404193)
chr2 (23-111)||(15911765-15911853)
chr2 (23-111)||(38207474-38207562)
chr2 (21-111)||(30490740-30490830)
chr2 (30-100)||(37127963-37128033)
chr2 (43-100)||(33945937-33945994)
chr2 (23-111)||(18137578-18137666)
chr2 (23-100)||(17308947-17309023)
chr2 (23-111)||(31994137-31994225)
chr2 (48-111)||(1114722-1114785)
chr2 (13-111)||(1209991-1210090)
chr2 (30-100)||(21649751-21649821)
chr2 (23-111)||(38703647-38703734)
[»] chr3 (38 HSPs)
chr3 (23-221)||(53393935-53394134)
chr3 (47-254)||(48062203-48062413)
chr3 (53-212)||(9119282-9119442)
chr3 (47-197)||(21450127-21450279)
chr3 (47-197)||(49327275-49327427)
chr3 (47-178)||(9127054-9127185)
chr3 (47-178)||(9135161-9135292)
chr3 (47-197)||(47374727-47374878)
chr3 (47-197)||(16482881-16483031)
chr3 (47-196)||(49440230-49440381)
chr3 (47-197)||(8486469-8486619)
chr3 (23-100)||(42899207-42899284)
chr3 (47-152)||(44207596-44207701)
chr3 (43-100)||(51328999-51329056)
chr3 (74-254)||(30388963-30389147)
chr3 (23-111)||(47646906-47646994)
chr3 (124-245)||(10494641-10494763)
chr3 (160-221)||(3733530-3733591)
chr3 (23-100)||(6936457-6936534)
chr3 (30-111)||(32529796-32529877)
chr3 (23-111)||(36402770-36402858)
chr3 (23-111)||(47013775-47013863)
chr3 (43-100)||(33843526-33843583)
chr3 (43-100)||(41174819-41174876)
chr3 (144-240)||(51328865-51328961)
chr3 (23-111)||(227619-227707)
chr3 (23-111)||(10509281-10509369)
chr3 (23-111)||(26502251-26502339)
chr3 (43-111)||(31765262-31765330)
chr3 (23-111)||(41193777-41193865)
chr3 (23-100)||(149316-149393)
chr3 (43-100)||(49166181-49166237)
chr3 (23-111)||(39586563-39586651)
chr3 (123-197)||(30527822-30527897)
chr3 (46-100)||(25214605-25214659)
chr3 (23-64)||(26982431-26982472)
chr3 (30-111)||(40937214-40937295)
chr3 (43-111)||(39353307-39353375)
[»] chr1 (39 HSPs)
chr1 (47-254)||(39598234-39598443)
chr1 (47-254)||(3475167-3475377)
chr1 (47-197)||(7564539-7564690)
chr1 (47-197)||(18272291-18272442)
chr1 (47-197)||(18276945-18277096)
chr1 (23-130)||(30518179-30518286)
chr1 (47-212)||(12524853-12525019)
chr1 (47-197)||(5749756-5749907)
chr1 (47-179)||(29946745-29946879)
chr1 (82-178)||(10223147-10223243)
chr1 (109-254)||(10313078-10313227)
chr1 (109-197)||(14270539-14270629)
chr1 (23-111)||(12528435-12528523)
chr1 (13-111)||(50262052-50262151)
chr1 (75-157)||(22334904-22334988)
chr1 (23-111)||(44757591-44757679)
chr1 (23-111)||(49851698-49851786)
chr1 (53-197)||(7199439-7199584)
chr1 (23-100)||(41723518-41723595)
chr1 (23-111)||(23984096-23984184)
chr1 (43-111)||(41091177-41091245)
chr1 (45-100)||(34549866-34549921)
chr1 (30-100)||(38860673-38860743)
chr1 (23-100)||(11952492-11952569)
chr1 (23-100)||(12700610-12700687)
chr1 (30-111)||(37952297-37952378)
chr1 (23-100)||(44496475-44496552)
chr1 (23-111)||(27216788-27216876)
chr1 (43-111)||(41086409-41086477)
chr1 (23-111)||(42882650-42882738)
chr1 (43-111)||(52632420-52632488)
chr1 (136-197)||(21535776-21535838)
chr1 (13-100)||(14587411-14587502)
chr1 (23-100)||(33801353-33801430)
chr1 (23-100)||(41900359-41900436)
chr1 (23-111)||(3517635-3517723)
chr1 (147-197)||(30518130-30518181)
chr1 (43-100)||(29961407-29961464)
chr1 (123-167)||(29913918-29913962)
[»] chr4 (45 HSPs)
chr4 (47-197)||(13721373-13721524)
chr4 (47-179)||(16684224-16684356)
chr4 (74-158)||(38990663-38990747)
chr4 (53-254)||(44108118-44108317)
chr4 (47-197)||(55612345-55612495)
chr4 (47-197)||(53511547-53511699)
chr4 (74-167)||(53269436-53269532)
chr4 (82-197)||(51889165-51889282)
chr4 (47-197)||(40692941-40693092)
chr4 (23-111)||(1602774-1602862)
chr4 (23-111)||(4189934-4190022)
chr4 (23-111)||(15542900-15542988)
chr4 (23-111)||(35158709-35158797)
chr4 (13-111)||(6963433-6963532)
chr4 (43-133)||(38551307-38551398)
chr4 (121-179)||(45659502-45659560)
chr4 (23-100)||(4048123-4048200)
chr4 (23-100)||(16023863-16023940)
chr4 (23-100)||(31093096-31093173)
chr4 (23-100)||(33281076-33281153)
chr4 (15-111)||(40728007-40728104)
chr4 (23-100)||(55136655-55136732)
chr4 (23-111)||(2013793-2013881)
chr4 (46-98)||(20516682-20516734)
chr4 (13-100)||(51538624-51538712)
chr4 (23-98)||(39807350-39807425)
chr4 (123-197)||(53632919-53632994)
chr4 (23-100)||(28780846-28780923)
chr4 (23-100)||(45462241-45462318)
chr4 (23-100)||(52417004-52417081)
chr4 (10-100)||(16451906-16451997)
chr4 (23-111)||(30003601-30003691)
chr4 (23-133)||(49374308-49374418)
chr4 (23-100)||(43841948-43842025)
chr4 (23-100)||(45924588-45924665)
chr4 (43-100)||(56084122-56084179)
chr4 (51-100)||(56463720-56463769)
chr4 (13-100)||(168611-168699)
chr4 (43-111)||(38218325-38218393)
chr4 (13-111)||(45229049-45229148)
chr4 (30-100)||(40602738-40602808)
chr4 (47-157)||(47985687-47985792)
chr4 (23-100)||(35319967-35320044)
chr4 (23-95)||(9036175-9036247)
chr4 (47-178)||(52919435-52919566)
[»] chr7 (24 HSPs)
chr7 (74-254)||(29332186-29332368)
chr7 (66-254)||(38257371-38257561)
chr7 (47-197)||(35585023-35585174)
chr7 (47-179)||(7255371-7255503)
chr7 (47-197)||(26792016-26792168)
chr7 (74-197)||(43749154-43749278)
chr7 (47-197)||(37998691-37998842)
chr7 (82-254)||(108759-108933)
chr7 (82-197)||(29739161-29739277)
chr7 (23-196)||(26188145-26188319)
chr7 (82-157)||(15032545-15032620)
chr7 (13-111)||(25529166-25529265)
chr7 (13-100)||(35794457-35794545)
chr7 (23-111)||(46254855-46254943)
chr7 (30-111)||(14816713-14816794)
chr7 (30-111)||(15263709-15263790)
chr7 (23-111)||(34847935-34848023)
chr7 (43-100)||(1377359-1377416)
chr7 (23-100)||(42321203-42321280)
chr7 (23-100)||(43458176-43458252)
chr7 (30-98)||(3601045-3601113)
chr7 (23-98)||(1852139-1852214)
chr7 (30-100)||(31326691-31326761)
chr7 (23-111)||(33950920-33951008)
[»] chr5 (25 HSPs)
chr5 (48-212)||(31471473-31471638)
chr5 (76-179)||(6432391-6432494)
chr5 (47-176)||(5343724-5343853)
chr5 (47-197)||(24855875-24856026)
chr5 (53-157)||(41616024-41616128)
chr5 (47-197)||(1710356-1710507)
chr5 (47-197)||(32746863-32747015)
chr5 (23-111)||(8197398-8197486)
chr5 (43-133)||(26279044-26279135)
chr5 (23-111)||(3556611-3556699)
chr5 (23-111)||(12723661-12723749)
chr5 (23-111)||(12785144-12785232)
chr5 (23-111)||(37012814-37012902)
chr5 (23-111)||(37030321-37030409)
chr5 (23-100)||(18808971-18809048)
chr5 (23-100)||(27114294-27114371)
chr5 (23-100)||(13822143-13822220)
chr5 (43-100)||(37883434-37883491)
chr5 (23-111)||(8734684-8734771)
chr5 (23-95)||(15858808-15858880)
chr5 (23-133)||(9715349-9715460)
chr5 (109-155)||(29047045-29047091)
chr5 (137-197)||(9129429-9129490)
chr5 (23-100)||(16513663-16513740)
chr5 (23-100)||(38679523-38679600)
[»] scaffold0168 (1 HSPs)
scaffold0168 (82-179)||(12255-12351)
[»] chr8 (22 HSPs)
chr8 (47-197)||(11687-11838)
chr8 (75-197)||(24830804-24830929)
chr8 (47-177)||(23420932-23421062)
chr8 (75-179)||(42190597-42190702)
chr8 (23-111)||(31701104-31701192)
chr8 (23-111)||(35684075-35684163)
chr8 (23-100)||(8240058-8240135)
chr8 (13-112)||(23144167-23144267)
chr8 (23-111)||(32337800-32337888)
chr8 (23-111)||(40105309-40105397)
chr8 (23-111)||(43098605-43098693)
chr8 (123-197)||(26911602-26911677)
chr8 (13-111)||(39260352-39260451)
chr8 (23-100)||(37098323-37098400)
chr8 (23-100)||(39318666-39318743)
chr8 (23-111)||(32947069-32947157)
chr8 (43-97)||(28284460-28284514)
chr8 (43-100)||(20091870-20091927)
chr8 (44-100)||(586482-586538)
chr8 (44-100)||(627385-627441)
chr8 (23-111)||(6347285-6347373)
chr8 (23-111)||(11076218-11076306)
[»] chr6 (12 HSPs)
chr6 (47-254)||(34949552-34949762)
chr6 (74-197)||(13036939-13037061)
chr6 (74-197)||(480366-480491)
chr6 (123-197)||(1778382-1778457)
chr6 (23-111)||(303744-303832)
chr6 (23-111)||(31318524-31318612)
chr6 (23-133)||(439021-439132)
chr6 (23-111)||(31722931-31723019)
chr6 (23-100)||(16395305-16395382)
chr6 (43-100)||(17519863-17519920)
chr6 (23-100)||(31271339-31271416)
chr6 (75-111)||(9305013-9305049)
[»] scaffold0054 (1 HSPs)
scaffold0054 (23-211)||(18980-19170)
[»] scaffold0160 (1 HSPs)
scaffold0160 (30-100)||(17311-17381)
[»] scaffold0001 (1 HSPs)
scaffold0001 (43-91)||(427263-427311)
[»] scaffold1301 (1 HSPs)
scaffold1301 (23-99)||(1645-1721)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 258
Target Start/End: Original strand, 24168506 - 24168741
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaag 122  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24168506 aaaatgaaagaaaagagcttaagtgaagagtaaaggaatttggtgaacatgcaagtctatttatagcctaaaacaagtgcttggtcatttggaagtcaag 24168605  T
Q  123 gaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaaccgccaaacatttggtgaaacaccacagtccaaaataaattgaggt 222  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  24168606 gaaaacgtgtttttcatttaaagccgtccaaaaaacacattaaaactcaactaaccgccaaacctttggtgaaacgccacagtccaaaataaattgaggt 24168705  T
Q  223 tctccggagtatataatctggaatgcatgaagtagg 258  Q
    |||||||||||||||||| |||||||||||||||||    
T  24168706 tctccggagtatataatccggaatgcatgaagtagg 24168741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 34906357 - 34906508
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || || |||| ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  34906357 gaagaatgaaggaaaatgttgaagattcatgcctttttatagcctagaacaagtcctaggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 34906456  T
Q  147 cgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    ||| |||||||| ||||||||||| ||||||| ||||||| |||||||||||    
T  34906457 cgttcaaaaaacgcattaaaactccactaacctgccaaacctttggtgaaac 34906508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 74 - 197
Target Start/End: Complemental strand, 16739494 - 16739370
Alignment:
Q  74 caagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaac 173  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| ||    
T  16739494 caagcctttttatagcctaaaacaagtcctaggtcatttggaagtcaagaaaaacgtgtttttcattcaaatccgtccaaaaaacgcattaaaactccac 16739395  T
Q  174 taa-ccgccaaacatttggtgaaac 197  Q
    ||| | |||||||  ||||||||||    
T  16739394 taatcggccaaaccattggtgaaac 16739370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 245
Target Start/End: Complemental strand, 21485406 - 21485182
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttgga-agtcaa 121  Q
    |||||| ||||||| || | ||||||||| |||| ||||||| |||| ||| |||| ||||||||||||||||||||| || ||||||  | | | ||||    
T  21485406 aaaatgtaagaaaagaggtgaagtgaagaatgaaagaatttgttgaatatgaaagcttatttatagcctaaaacaagtcctaggtcataagtacaatcaa 21485307  T
Q  122 ggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaac-cgccaaacatttggtgaaacaccacagtccaaaataaattgag 220  Q
      ||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||  ||||||| ||||||||||| |||| ||||||||  || ||||    
T  21485306 taaaaacgtgtttgtcattcaaaaccgaccaaaaaacgcattaaaactccactaactggccaaacctttggtgaaacgccaccgtccaaaaacaactgag 21485207  T
Q  221 gttctccggagtatataatctggaa 245  Q
      | |||||| ||||||||| ||||    
T  21485206 tgtttccggattatataatccggaa 21485182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 34948531 - 34948615
Alignment:
Q  74 caagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaac 158  Q
    ||||||| |||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34948531 caagcctttttatagcctaaaacaagtcataggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaac 34948615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 254
Target Start/End: Complemental strand, 5464460 - 5464285
Alignment:
Q  82 tttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaa-aaaacacattaaaactcaactaaccgc 180  Q
    |||||||||||||||||||  | ||| ||||||||||||||||||||  ||||||||||||||||||||||| |||||  |||||||||| ||||||||     
T  5464460 tttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacacgtttttcattcaaaaccgtccaaaaaaacgtattaaaactccactaaccgg 5464361  T
Q  181 ca-aacatttggtgaaacaccacagtccaaaat-aaattgaggttctccggagtatataatctggaatgcatgaag 254  Q
    || ||| |||||||| ||  ||| | |||||||   ||||||| | |||||| | |||||||||||||||||||||    
T  5464360 cataacctttggtgatacgtcaccggccaaaatgttattgagggtttccggattttataatctggaatgcatgaag 5464285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 5938482 - 5938366
Alignment:
Q  82 tttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaacc-gc 180  Q
    |||||||||||||||||||  | ||||||||||||||||| |||||| |||||||||||||||||| |||||||||   |||||||||| ||||||| ||    
T  5938482 tttatagcctaaaacaagtcataggtcatttggaagtcaatgaaaacatgtttttcattcaaaaccttccaaaaaatgtattaaaactccactaaccggc 5938383  T
Q  181 caaacatttggtgaaac 197  Q
    ||||| |||| ||||||    
T  5938382 caaacctttgatgaaac 5938366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 43333864 - 43333947
Alignment:
Q  74 caagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaa 157  Q
    ||||||| |||||||||||||||||||  | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43333864 caagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacttgtttttcattcaaaaccgtccaaaaaa 43333947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 15113455 - 15113305
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||| ||| |||||||||||||||||||  | | | ||||||| ||||||||||||||||||||| |||||||     
T  15113455 gaagaatgaaggaaaatgttgaagatccaaacctttttatagcctaaaacaagtcatagataatttggatgtcaaggaaaacgtgtttttcgttcaaaat 15113356  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccgccaaacatttggtgaaac 197  Q
    ||||||||||||  ||||||| || |||||||| | ||| |||||||||||    
T  15113355 cgtccaaaaaacgtattaaaattccactaaccgtctaacctttggtgaaac 15113305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 41961751 - 41961824
Alignment:
Q  82 tttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaa 155  Q
    |||||||||||||||||||  | ||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  41961751 tttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacgtgtttttcattcaaaacagtccaaaa 41961824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 13278683 - 13278771
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| ||| ||||||    
T  13278683 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctttgtcatt 13278771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 6404105 - 6404193
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | | ||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  6404105 aaaatgtaagaaaagaggtgatgtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 6404193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 15911765 - 15911853
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| | |||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  15911765 aaaatgtaagaaaagaggtgaagtgaagaatcaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 15911853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 38207474 - 38207562
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||| ||||||||||||||||||||| || |||||||    
T  38207474 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgtaagcatatttatagcctaaaacaagtcctaggtcatt 38207562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 30490830 - 30490740
Alignment:
Q  21 aaaaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||||| ||||||| |||| | ||||||| || ||| ||||| |||| ||| |||||||||||| ||||||||||||| || |||||||    
T  30490830 aaaaaatgtaagaaaagagctgaggtgaagaatgtaggtatttgttgaagatgaaagcctatttatggcctaaaacaagtcctaggtcatt 30490740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 37128033 - 37127963
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||||||| | ||||||||| |||| ||||||| | || |||||||| |||||||||||||||||||||    
T  37128033 aagaaaataggtgaagtgaagaatgaaagaatttgttaaaaatgcaagcttatttatagcctaaaacaagt 37127963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 33945937 - 33945994
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||||| |||||||||||| |||| |||||| ||||| |||||||||||||||||    
T  33945937 aagtgaagaatgaaggaatttgttgaagatgcaaacctatatatagcctaaaacaagt 33945994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 18137578 - 18137666
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||  ||||||||||||||||||||| |||| || |||||||    
T  18137578 aaaatggaagaaaaaagatgaagtgaagaatgaaggtatttgttgaagataaaagcctatttatagcctaaaataagtcctaggtcatt 18137666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 17308947 - 17309023
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||| |||||||||    
T  17308947 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttg-tgaagatggaagcctatttatagccgaaaacaagt 17309023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 31994225 - 31994137
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | |||||| || |||||  ||||| |||| ||| || ||||||||||||||||||||||| || |||||||    
T  31994225 aaaatggaagaaaagaggtgaagtgatgaatgaagatatttgttgaatatggaaacctatttatagcctaaaacaagtcctaggtcatt 31994137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 1114722 - 1114785
Alignment:
Q  48 aagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||| |||||| ||||| |||| ||| ||||||||||||||| |||||||||| || |||||||    
T  1114722 aagaatgaaggtatttgttgaagatgaaagcctatttatagcttaaaacaagtcctaggtcatt 1114785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 1210090 - 1209991
Alignment:
Q  13 aatatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||||||| |||||| ||||||| |  | ||||||||| || ||| |||||  ||| ||| ||||||||||||||| |||||||||| || |||||||    
T  1210090 aatatttgaagaaaatggaagaaaagatgtgaagtgaagaatgcaggtatttgtcgaagatggaagcctatttatagcttaaaacaagtcctaggtcatt 1209991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 21649821 - 21649751
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||| || | ||||||||| ||||| |||||| |||| ||| ||| ||||||||||||| ||||||||    
T  21649821 aagaaaaaaggtgaagtgaagaatgaagaaatttgatgaagatggaagactatttatagccttaaacaagt 21649751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 38703734 - 38703647
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| | |||| ||||| |||| ||| ||||| ||||||||||||||| |||| || |||||||    
T  38703734 aaaatgtaagaaaagaggtgaagtgaagaataaaggtatttgttgaagatggaagcc-atttatagcctaaaagaagtcctaggtcatt 38703647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 53393935 - 53394134
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgctt--ggtcatttggaagtca 120  Q
    |||||||||||||| || | ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  53393935 aaaatgaaagaaaagagataaagtgaagaatgaaggaatttgttgaacatgcaagcctatttatagcctaaaacaagt-cttagggtcatttggaagtca 53394033  T
Q  121 aggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaaccg-ccaaacatttggtgaaacaccacagtccaaaataaattga 219  Q
    |||||||||||||| |||||||||||||||| |||||  ||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||| |||    
T  53394034 aggaaaacgtgtttgtcattcaaaaccgtcc-aaaaatgcattaaaactccactaaccgtccaaacctttggtgaaacaccaccgtccaaaataaactga 53394132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 254
Target Start/End: Original strand, 48062203 - 48062413
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| |||||||||||||||||||| |||||||||||||||||    
T  48062203 gaagaatgaaggaaaatgttgaagattcaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacttgtttttcattcaaaac 48062302  T
Q  147 cgtcc-aaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaacaccacagtccaaaata-aattgaggttctccggagtatataatctgg 243  Q
    ||||| |||||||  |||||||||| |||||||| || ||| |||||||||||  ||||| ||||||||  | ||||| | |||||| | ||||||| ||    
T  48062303 cgtccaaaaaaacgtattaaaactccactaaccggcataacctttggtgaaacgtcacaggccaaaatattactgagggtttccggattttataatccgg 48062402  T
Q  244 aatgcatgaag 254  Q
    |||||||||||    
T  48062403 aatgcatgaag 48062413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 53 - 212
Target Start/End: Original strand, 9119282 - 9119442
Alignment:
Q  53 tgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtcca 152  Q
    ||||||||  || |||| || ||||||| |||||||||||||| ||||  | ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9119282 tgaaggaaaatgttgaagatccaagcctgtttatagcctaaaataagtcataggtaatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtcca 9119381  T
Q  153 aaaaacacattaaaactcaactaacc-gccaaacatttggtgaaacaccacagtccaaaat 212  Q
    ||||||  |||||||||| ||||||| ||| ||| ||||||||||| |||| | |||||||    
T  9119382 aaaaacgtattaaaactccactaaccggcctaacctttggtgaaacgccaccggccaaaat 9119442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 21450279 - 21450127
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||| ||| |||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||    
T  21450279 gaagaatgaaggaaaatgttgaagatccaaacctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacgtgtttttcattcaaaac 21450180  T
Q  147 cgtccaa-aaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||||| |||||  |||||||||| |||||||| || ||| |||||||||||    
T  21450179 cgtccaaaaaaacgtattaaaactccactaaccggcataacctttggtgaaac 21450127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 49327427 - 49327275
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| |||||||||||||||||||| |||||||||||||||||    
T  49327427 gaagaatgaaggaaaatgttgaagattcaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacttgtttttcattcaaaac 49327328  T
Q  147 cgtccaa-aaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||||| |||||  |||||||||| |||||||| || ||| |||||||||||    
T  49327327 cgtccaaaaaaacgtattaaaactccactaaccggcataacctttggtgaaac 49327275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 9127054 - 9127185
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  |  || ||||||||||||||||||||||||||||||||||||||    
T  9127054 gaagaatgaaggaaaatgttgaagatccaagcctgtttatagcctaaaacaagtcatacgtaatttggaagtcaaggaaaacgtgtttttcattcaaaac 9127153  T
Q  147 cgtccaaaaaacacattaaaactcaactaacc 178  Q
    |||||||||| |  |||||||||| |||||||    
T  9127154 cgtccaaaaatcgtattaaaactccactaacc 9127185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 9135161 - 9135292
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  |  || ||||||||||||||||||||||||||||||||||||||    
T  9135161 gaagaatgaaggaaaatgttgaagatccaagcctgtttatagcctaaaacaagtcatacgtaatttggaagtcaaggaaaacgtgtttttcattcaaaac 9135260  T
Q  147 cgtccaaaaaacacattaaaactcaactaacc 178  Q
    |||||||||| |  |||||||||| |||||||    
T  9135261 cgtccaaaaatcgtattaaaactccactaacc 9135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 47374878 - 47374727
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || |||| || |||||||||||||||||||  | ||| |||||||||||||||||||| |||||||||||||||||    
T  47374878 gaagaatgaaggaaaatgttgaagatccaagactttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacatgtttttcattcaaaac 47374779  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||||||||||  |||||||||| ||||| || || ||| |||||||||||    
T  47374778 cgtccaaaaaacgtattaaaactccactaaacggcataacctttggtgaaac 47374727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 16482881 - 16483031
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || |||| || |||||||||||||||||||  | ||| |||||||||||||| ||||| | |||||||||||||||    
T  16482881 gaagaatgaaggaaaatgttgaagatccaagtctttttatagcctaaaacaagtcataggtaatttggaagtcaag-aaaacttatttttcattcaaaac 16482979  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||||||||||  |||||||||| |||||||| || ||| |||||||||||    
T  16482980 cgtccaaaaaacgtattaaaactccactaaccggcataacctttggtgaaac 16483031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 196
Target Start/End: Complemental strand, 49440381 - 49440230
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || |||||||  |||||| |||||||||||  | ||| |||||||||||||||||||| |||||||||||||||||    
T  49440381 gaagaatgaaggaaaatgttgaagatccaagccttattataggctaaaacaagtcataggtaatttggaagtcaaggaaaacttgtttttcattcaaaac 49440282  T
Q  147 cg-tccaaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaa 196  Q
    || || |||||||  |||||||||| |||||||| || ||| ||||||||||    
T  49440281 cgttcaaaaaaacgtattaaaactccactaaccggcataacctttggtgaaa 49440230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 8486619 - 8486469
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || || |||| |||||||||||||||||||  | ||| |||||||||||||| |||||||| ||||||||||||||    
T  8486619 gaagaatgaaggaaaatgttgaagattcatgcctttttatagcctaaaacaagtcataggtaatttggaagtcaagaaaaacgtg-ttttcattcaaaac 8486521  T
Q  147 cgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    | |||||||||   |||||||||  ||||||| ||| ||| |||||||||||    
T  8486520 catccaaaaaatgtattaaaacttcactaaccggcctaacctttggtgaaac 8486469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 42899207 - 42899284
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  42899207 aaaatgtaagaaaaaaggtgaagtgaagaatgaaggaatttgttgaaaatgcaagcctatttatagcctaaaacaagt 42899284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 152
Target Start/End: Complemental strand, 44207701 - 44207596
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||| | |||||||||||||||||||  | | | |||||||||||||||||||| |||||||||||||||||    
T  44207701 gaagaatgaaggaaaatgttgaagatccaagcttttttatagcctaaaacaagtcatagataatttggaagtcaaggaaaacttgtttttcattcaaaac 44207602  T
Q  147 cgtcca 152  Q
    ||||||    
T  44207601 cgtcca 44207596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 51329056 - 51328999
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  51329056 aagtgaagaatgaaggaatttgttgaacatgcaagcctatttatagcctaaaacaagt 51328999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 254
Target Start/End: Original strand, 30388963 - 30389147
Alignment:
Q  74 caagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaa-ccgtcc-aaaaaacacattaaaactca 171  Q
    ||||||| ||||||||||||||||| |  | ||| |||||||||||||| ||||| |||||||||||||||| |||||| |||||||  ||||||||||     
T  30388963 caagcctttttatagcctaaaacaactcataggtaatttggaagtcaagaaaaacttgtttttcattcaaaacccgtccaaaaaaacgtattaaaactcc 30389062  T
Q  172 actaaccgcca-aacatttggtgaaacaccacagtccaaaat-aaattgaggttctccggagtatataatctggaatgcatgaag 254  Q
    |||||||| || ||  ||| |||||||  ||| | |||||||   | ||||| | |||||| | |||||||||||||||||||||    
T  30389063 actaaccggcataatctttagtgaaacgtcaccggccaaaatgttactgagggtttccggattttataatctggaatgcatgaag 30389147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 47646906 - 47646994
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  47646906 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 47646994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 10494763 - 10494641
Alignment:
Q  124 aaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaaccg-ccaaacatttggtgaaacaccacagtccaaaataaattgaggt 222  Q
    ||||| |||| | ||||||||| |||||||||||  ||||||||||| ||||| || |||||| ||||||||||| ||||  ||||||| |||||||||     
T  10494763 aaaacatgttctacattcaaaatcgtccaaaaaatgcattaaaactccactaatcggccaaacctttggtgaaacgccaccatccaaaacaaattgaggg 10494664  T
Q  223 tctccggagtatataatctggaa 245  Q
    | | |||| ||||||||| ||||    
T  10494663 ttttcggattatataatccggaa 10494641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 3733591 - 3733530
Alignment:
Q  160 cattaaaactcaactaaccgccaaacatttggtgaaacaccacagtccaaaataaattgagg 221  Q
    ||||||||||| ||||||||  |||||||||||||||| ||||||||||||||||| |||||    
T  3733591 cattaaaactccactaaccgtaaaacatttggtgaaacgccacagtccaaaataaaatgagg 3733530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 6936457 - 6936534
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||||||||||| || | ||||||||| |||| | ||||| |||| ||| ||||||||||||||||||||||||||    
T  6936457 aaaatgaaagaaaaaaggtgaagtgaagaatgaatgtatttgttgaagatggaagcctatttatagcctaaaacaagt 6936534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 32529796 - 32529877
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  32529796 aagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 32529877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 36402858 - 36402770
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||| |||||||||||| || |||||||    
T  36402858 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttataacctaaaacaagtcctaggtcatt 36402770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 47013863 - 47013775
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| || ||||||||||||||||||||||| || |||||||    
T  47013863 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaaacctatttatagcctaaaacaagtcctaggtcatt 47013775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 33843526 - 33843583
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||||| |||||||||||| |||| ||| || |||||||||||||||||||||||    
T  33843526 aagtgaagaatgaaggaatttgttgaagatggaaacctatttatagcctaaaacaagt 33843583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 41174819 - 41174876
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  41174819 aagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagt 41174876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 51328961 - 51328865
Alignment:
Q  144 aaccgtccaaaaaacacattaaaactcaactaa-ccgccaaacatttggtgaaacaccacagtccaaaataaattgaggttctccggagtatataatc 240  Q
    ||||||||||||||| ||||||||||| ||||| | |||||||||||||||||||  ||| ||||||||  ||||| |||| |||| | |||||||||    
T  51328961 aaccgtccaaaaaacgcattaaaactccactaatcggccaaacatttggtgaaac-gcaccgtccaaaaataattgtggttttccgaattatataatc 51328865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 227619 - 227707
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| | || ||| ||| |||||||||||||||||||||| || |||||||    
T  227619 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttaaagatggaagtctatttatagcctaaaacaagtcctaggtcatt 227707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 10509369 - 10509281
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||  ||||||||||||||||||||| |||| || |||||||    
T  10509369 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatagaagcctatttatagcctaaaagaagtcctaggtcatt 10509281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 26502339 - 26502251
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| || ||| ||||| |||| ||| |||||||||||||| ||||||||||| || |||||||    
T  26502339 aaaatgcaagaaaagaggtgaagtgaagaatgtaggtatttgttgaagatggaagcctatttatagtctaaaacaagtcctaggtcatt 26502251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 31765330 - 31765262
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    ||||||||| |||||| ||||| |||| ||| ||||||||||||| |||||||||||| || |||||||    
T  31765330 aagtgaagaatgaaggtatttgttgaagatggaagcctatttataacctaaaacaagtcctaggtcatt 31765262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 41193865 - 41193777
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||| ||| |||||| ||||| |||| ||| |||| ||||||||||||||||||||| || |||||||    
T  41193865 aaaatggaagaaaagaggtgaagtggagaatgaaggtatttgttgaagatggaagcatatttatagcctaaaacaagtcctaggtcatt 41193777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 149316 - 149393
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| || | | ||||| |||| ||| ||||||||||||||||||||||||||    
T  149316 aaaatggaagaaaagaggtgaagtgaagaatgtaagtatttgttgaagatggaagcctatttatagcctaaaacaagt 149393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 49166237 - 49166181
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  49166237 aagtgaagaatgaaggtatttg-tgaagatggaagcctatttatagcctaaaacaagt 49166181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 39586563 - 39586651
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| |||||||||| | || |||||| |||| | ||||| |||| ||| ||||||||||||||| |||||||| | || |||||||    
T  39586563 aaaatgtaagaaaataggtgaattgaagaatgaaagtatttgttgaaaatggaagcctatttatagcttaaaacaaatcctaggtcatt 39586651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 30527897 - 30527822
Alignment:
Q  123 gaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    |||||||||||| |||||||||||||  |||||||  ||||||||||| | ||||| ||||||| ||| |||||||    
T  30527897 gaaaacgtgtttgtcattcaaaaccggtcaaaaaatgcattaaaactccattaaccggccaaacctttagtgaaac 30527822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 25214659 - 25214605
Alignment:
Q  46 tgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| |||||||||||| | || ||| ||| ||||||||||||||||||||||    
T  25214659 tgaagaatgaaggaatttgttaaagatgtaagtctatttatagcctaaaacaagt 25214605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 26982472 - 26982431
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttg 64  Q
    ||||||||||||||||| | ||||||||| ||||||||||||    
T  26982472 aaaatgaaagaaaatagatgaagtgaagaatgaaggaatttg 26982431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 40937214 - 40937295
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    ||||||| || | ||||||| | |||| | ||||| |||| ||| |||||||||||||||||||||||| | || |||||||    
T  40937214 aagaaaagaggtgaagtgaaaaatgaaagtatttgttgaagatggaagcctatttatagcctaaaacaaatcctaggtcatt 40937295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 39353307 - 39353375
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    ||||||||| |||| | || || |||| ||| |||||||||||||||||||||||| | || |||||||    
T  39353307 aagtgaagaatgaatgtatctgttgaagatggaagcctatttatagcctaaaacaaatcctaggtcatt 39353375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 47 - 254
Target Start/End: Original strand, 39598234 - 39598443
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||    
T  39598234 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacgtgtttttcattcaaaac 39598333  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaacaccacagtccaaaat-aaattgaggttctccggagtatataatctgga 244  Q
    ||||||||||||  |||||||||| |||||||| || ||| |||||||||||  ||| | |||||||   | ||||| | |||||| | ||||||| |||    
T  39598334 cgtccaaaaaacgtattaaaactccactaaccggcataacctttggtgaaacgtcaccggccaaaatgttactgagggtttccggattttataatccgga 39598433  T
Q  245 atgcatgaag 254  Q
    ||||||||||    
T  39598434 atgcatgaag 39598443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 47 - 254
Target Start/End: Complemental strand, 3475377 - 3475167
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||    
T  3475377 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacgtgtttttcattcaaaac 3475278  T
Q  147 cgtccaa-aaaacacattaaaactcaactaaccgcca-aacatttggtgaaacaccacagtccaaaat-aaattgaggttctccggagtatataatctgg 243  Q
    ||||||| |||||  |||||||||| |||||||| || ||| |||||||||||  ||| | |||||||   | ||||| | |||||| | ||||||||||    
T  3475277 cgtccaaaaaaacgtattaaaactccactaaccggcataacctttggtgaaacgtcaccggccaaaatgttactgagggtttccggattttataatctgg 3475178  T
Q  244 aatgcatgaag 254  Q
    |||||||||||    
T  3475177 aatgcatgaag 3475167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 7564690 - 7564539
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||| ||| |||||||||||||||||||  | |||||||||||||| ||||||||||| ||||| |||||||||    
T  7564690 gaagaatgaaggaaaatgttgaagatccaaacctttttatagcctaaaacaagtcataggtcatttggaagtaaaggaaaacgtattttttattcaaaac 7564591  T
Q  147 cgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    |||||||||||| ||||||||||| ||||||| ||||||| |||||||||||    
T  7564590 cgtccaaaaaacgcattaaaactccactaaccggccaaacctttggtgaaac 7564539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 18272291 - 18272442
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| ||||||||||||| ||||||||||||||||||||||||    
T  18272291 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaatgaaaacgtgtttttcattcaaaac 18272390  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||||||||||  |||||||||| |||||||| || ||| |||||||||||    
T  18272391 cgtccaaaaaacgtattaaaactccactaaccggcataacctttggtgaaac 18272442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 18276945 - 18277096
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| ||||||||||||| ||||||||||||||||||||||||    
T  18276945 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaatgaaaacgtgtttttcattcaaaac 18277044  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||||||||||  |||||||||| |||||||| || ||| |||||||||||    
T  18277045 cgtccaaaaaacgtattaaaactccactaaccggcataacctttggtgaaac 18277096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 30518286 - 30518179
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaag 122  Q
    |||||||||||||| || ||||||||||| ||||| |||||  ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||    
T  30518286 aaaatgaaagaaaagagattaagtgaagaatgaagaaattttttgaacatgcaagcctatttatagcctaaaacaagtcctacgtcatttggaagtcaag 30518187  T
Q  123 gaaaacgt 130  Q
     |||||||    
T  30518186 aaaaacgt 30518179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 12525019 - 12524853
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  |  || |||||||||||||||||||| |||||||||||||||||    
T  12525019 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataagtaatttggaagtcaaggaaaacttgtttttcattcaaaac 12524920  T
Q  147 cgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaacaccacagtccaaaat 212  Q
    ||||| ||||||  |||||||||| ||||||| ||  ||| |||||||||||| ||| | |||||||    
T  12524919 cgtcctaaaaacgtattaaaactccactaaccagcataacctttggtgaaacatcaccggccaaaat 12524853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 5749907 - 5749756
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| ||||||||||||||||| |  | ||| |||| ||||||||||||||||||||||||||||||||     
T  5749907 gaagaatgaaggaaaatgttgaagattcaagcctttttatagcctaaaacaattcataggtaatttagaagtcaaggaaaacgtgtttttcattcaaaat 5749808  T
Q  147 cgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    |||||||||| |  |||||||||| ||||||| ||| ||| |||||||||||    
T  5749807 cgtccaaaaatcgtattaaaactccactaaccggcctaacctttggtgaaac 5749756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 29946879 - 29946745
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| |||||||||||||||||||| |||| ||||||||||||    
T  29946879 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacttgttcttcattcaaaac 29946780  T
Q  147 cgtccaaaaaacac--attaaaactcaactaaccg 179  Q
    ||||||||||| ||  |||||||||| ||||||||    
T  29946779 cgtccaaaaaaaacgtattaaaactccactaaccg 29946745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 10223243 - 10223147
Alignment:
Q  82 tttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaacc 178  Q
    |||||||||||||||||||  | ||| |||||||||||||| ||||||||||||||||| |||||||||||||||||  |||||||||| |||||||    
T  10223243 tttatagcctaaaacaagtcataggtaatttggaagtcaagaaaaacgtgtttttcatttaaaaccgtccaaaaaacgtattaaaactccactaacc 10223147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 254
Target Start/End: Complemental strand, 10313227 - 10313078
Alignment:
Q  109 atttggaagtcaaggaaaacgtgttttt-cattcaaaaccgtccaa-aaaacacattaaaactcaactaaccgcca-aacatttggtgaaacaccacagt 205  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||| |||||  |||||||||| |||||||| || ||| |||||||||||| ||| |     
T  10313227 atttggaagtcaaggaaaacttgttttttcattcaaaaccgtccaaaaaaacgtattaaaactccactaaccggcataacctttggtgaaacatcaccgg 10313128  T
Q  206 ccaaaata-aattgaggttctccggagtatataatctggaatgcatgaag 254  Q
    ||||||||  | ||||| | |||||| | ||||||| |||||||||||||    
T  10313127 ccaaaatattactgagggtttccggattttataatccggaatgcatgaag 10313078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 14270539 - 14270629
Alignment:
Q  109 atttggaagtcaaggaaaacgtgtttttcattcaaaaccgtcc-aaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||  |||||||||| |||||||| || ||| |||||||||||    
T  14270539 atttggaagtcaaggaaaacttgtttttcattcaaaaccgtccaaaaaaacgtattaaaactccactaaccgacataacctttggtgaaac 14270629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 12528435 - 12528523
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| |||||||||| | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  12528435 aaaatggaagaaaataggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 12528523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 50262151 - 50262052
Alignment:
Q  13 aatatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||||||| |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  50262151 aatatttgaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 50262052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 22334988 - 22334904
Alignment:
Q  75 aagcctatttatagcctaaaacaagtgctt--ggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaa 157  Q
    |||||| |||||||||||||||||||  |   ||| |||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  22334988 aagcctttttatagcctaaaacaagtcatataggtaatttggaagttaaggaaaacttgtttttcattcaaaaccgtccaaaaaa 22334904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 44757679 - 44757591
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  44757679 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 44757591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 49851698 - 49851786
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  49851698 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcatt 49851786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 197
Target Start/End: Complemental strand, 7199584 - 7199439
Alignment:
Q  53 tgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtcca 152  Q
    ||||||||  || |||| || ||||||| |||||||||||||||||||  |  || ||||| ||||||  |||||| ||||||||||| |||||||||||    
T  7199584 tgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataagtaatttg-aagtcagtgaaaacttgtttttcattaaaaaccgtcca 7199486  T
Q  153 a-aaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    | |||||  |||||||||| |||||||| || ||| |||||||||||    
T  7199485 aaaaaacgtattaaaactccactaaccggcataacctttggtgaaac 7199439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 41723518 - 41723595
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  41723518 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagt 41723595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 23984184 - 23984096
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| || ||||||||||||||||||||||| || |||||||    
T  23984184 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaaacctatttatagcctaaaacaagtcctaggtcatt 23984096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 41091177 - 41091245
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  41091177 aagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 41091245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 34549866 - 34549921
Alignment:
Q  45 gtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||    
T  34549866 gtgaagaatgaaggaatttgttgaatatgcaaacctatttatagcctaaaacaagt 34549921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 38860673 - 38860743
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  38860673 aagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagt 38860743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 11952569 - 11952492
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||| ||||    
T  11952569 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaataagt 11952492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 12700687 - 12700610
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||  ||||| |||| ||| ||||||||||||||||||||||||||    
T  12700687 aaaatgtaagaaaagaggtcaagtgaagaatgaagatatttgttgaagatggaagcctatttatagcctaaaacaagt 12700610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 37952297 - 37952378
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||| ||||||||||||||||||| || |||||||    
T  37952297 aagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctttttatagcctaaaacaagtcctaggtcatt 37952378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 44496475 - 44496552
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| |||||||||| |  |||||||| |||| | ||||| |||| ||| ||||||||||||||||||||||||||    
T  44496475 aaaatggaagaaaataggtggagtgaagaatgaaagtatttgttgaagatgaaagcctatttatagcctaaaacaagt 44496552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 27216788 - 27216876
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||| | ||||  |||| ||| |||||||||||||||||||||||||| || |||||||    
T  27216788 aaaatggaagaaaagaggtgaagtgaagaatgaaagtattttttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcatt 27216876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 41086409 - 41086477
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    ||||||||| |||||| ||||| |||| ||| |||||||||||||| ||||||||||| || |||||||    
T  41086409 aagtgaagaatgaaggtatttgttgaagatggaagcctatttatagtctaaaacaagtcctaggtcatt 41086477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 42882738 - 42882650
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | | ||||||| |||||  ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  42882738 aaaatgtaagaaaagaggtgatgtgaagaatgaagatatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 42882650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 52632488 - 52632420
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    ||||||||| |||||  ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  52632488 aagtgaagaatgaagacatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 52632420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 21535838 - 21535776
Alignment:
Q  136 tcattcaaaaccgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    ||||||||||||||| ||||||| ||||||||||| |||| || ||||||| |||||||||||    
T  21535838 tcattcaaaaccgtctaaaaaacgcattaaaactccactacccggccaaacctttggtgaaac 21535776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 14587502 - 14587411
Alignment:
Q  13 aatatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcc---tatttatagcctaaaacaagt 100  Q
    |||||||||| |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||   |||||||||||||||||||||    
T  14587502 aatatttgaagaaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagccgcctatttatagcctaaaacaagt 14587411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 33801353 - 33801430
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| || ||| ||||  |||| ||| ||||||||||||||||||||||||||    
T  33801353 aaaatgtaagaaaagaggtgaagtgaagaatgtaggtattttttgaagatggaagcctatttatagcctaaaacaagt 33801430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 41900436 - 41900359
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | | ||||||| |||||| ||||  |||| ||| ||||||||||||||||||||||||||    
T  41900436 aaaatggaagaaaagaggtaaggtgaagaatgaaggtatttattgaagatggaagcctatttatagcctaaaacaagt 41900359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 3517723 - 3517635
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||  ||| |||||||||||||||||||| | || |||||||    
T  3517723 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagataaaagtctatttatagcctaaaacaactcctaggtcatt 3517635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 30518181 - 30518130
Alignment:
Q  147 cgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    |||||||||||| ||||||||||| ||||||| ||||||| |||||||||||    
T  30518181 cgtccaaaaaacgcattaaaactccactaaccggccaaacctttggtgaaac 30518130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 29961407 - 29961464
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||||| |||||| ||||| |||| ||| ||| ||||||||||||||||| ||||    
T  29961407 aagtgaagaatgaaggtatttgttgaagatggaagtctatttatagcctaaaataagt 29961464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 29913918 - 29913962
Alignment:
Q  123 gaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaa 167  Q
    |||||||||||| |||||||||| |||||||||||  ||||||||    
T  29913918 gaaaacgtgtttgtcattcaaaatcgtccaaaaaatgcattaaaa 29913962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 13721373 - 13721524
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| |||||||||||||||||||| |||||||||||||||||    
T  13721373 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacatgtttttcattcaaaac 13721472  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||||||||||  |||||||||| |||||||| || ||| |||||||||||    
T  13721473 cgtccaaaaaacgtattaaaactccactaaccggcataacctttggtgaaac 13721524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 16684356 - 16684224
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| |||||||||||||||||||| |||||||||||||||||    
T  16684356 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacatgtttttcattcaaaac 16684257  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccg 179  Q
    ||||||||||||  || ||||||| ||||||||    
T  16684256 cgtccaaaaaacgtatcaaaactccactaaccg 16684224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 38990747 - 38990663
Alignment:
Q  74 caagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaac 158  Q
    ||||||| |||||||||||||||||||  | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38990747 caagcctttttatagcctaaaacaagttataggtaatttagaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaac 38990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 254
Target Start/End: Original strand, 44108118 - 44108317
Alignment:
Q  53 tgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtcc- 151  Q
    ||||||||  || |||| || ||||||| |||||||||||||||||||  |     |||||||||||||||||||||||||||||||||||||||||||     
T  44108118 tgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcat-----atttggaagtcaaggaaaacgtgtttttcattcaaaaccgtcca 44108212  T
Q  152 aaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaacaccacagtccaaaat-aaattgaggttctccggagtatataatctggaatgca 249  Q
    |||||||  || ||||||| ||||||| ||| ||| |||||||||||  ||| | |||||||   ||||||| | |||||| | ||||||| ||||||||    
T  44108213 aaaaaacgtataaaaactccactaaccggcctaacctttggtgaaacgtcaccgcccaaaatgttattgagggtttccggattttataatccggaatgca 44108312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 55612495 - 55612345
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || |||| || |||||||||||||||||||  | ||| |||||||||||||| ||||| | |||||||||||||||    
T  55612495 gaagaatgaaggaaaatgttgaagatccaagtctttttatagcctaaaacaagtcataggtaatttggaagtcaag-aaaacttatttttcattcaaaac 55612397  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||||||||||  |||||||||| |||||||| || ||| |||||||||||    
T  55612396 cgtccaaaaaacgtattaaaactccactaaccggcataacctttggtgaaac 55612345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 53511547 - 53511699
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||| ||| |||||||||||||||||||  | ||| |||||||||| ||||||||| | |||||||||||||||    
T  53511547 gaagaatgaaggaaaatgttgaagatccaaacctttttatagcctaaaacaagtcataggtaatttggaagttaaggaaaacttatttttcattcaaaac 53511646  T
Q  147 cgtcc-aaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||| |||||||  |||||||||| |||||||| || ||| |||||||||||    
T  53511647 cgtccaaaaaaacgtattaaaactccactaaccggcataacctttggtgaaac 53511699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 53269436 - 53269532
Alignment:
Q  74 caagcctatttatagcctaaaacaag---tgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaa 167  Q
    ||||||| ||||||||||||||||||   |  | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  53269436 caagcctttttatagcctaaaacaagaagtcataggtaatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacgtattaaaa 53269532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 51889165 - 51889282
Alignment:
Q  82 tttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtcc-aaaaaacacattaaaactcaactaaccgc 180  Q
    ||||||||| |||||||||  |  || |||||||||||||||||||| |||||||||||||||||||||| |||||||  |||||||||| ||||||||     
T  51889165 tttatagccaaaaacaagtcataagtaatttggaagtcaaggaaaacttgtttttcattcaaaaccgtccaaaaaaacgtattaaaactccactaaccgg 51889264  T
Q  181 ca-aacatttggtgaaac 197  Q
    || ||| |||||||||||    
T  51889265 cataacctttggtgaaac 51889282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 40693092 - 40692941
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtc-aaggaaaacgtgtttttcattcaaaa 145  Q
    ||||| ||||||||  || |||| || | ||||| |||||||||||||||||||  | ||| ||||||||||| |||||||||||| |||||||||||||    
T  40693092 gaagaatgaaggaaaatgttgaagatcccagcctttttatagcctaaaacaagtcataggtaatttggaagtctaaggaaaacgtg-ttttcattcaaaa 40692994  T
Q  146 ccgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
      |||||||||||  |||||||||  ||||||| ||| ||| |||||||||||    
T  40692993 tagtccaaaaaacgtattaaaacttcactaaccggcctaacctttggtgaaac 40692941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 1602774 - 1602862
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  1602774 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcatt 1602862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 4190022 - 4189934
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  4190022 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 4189934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 15542988 - 15542900
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  15542988 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 15542900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 35158709 - 35158797
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  35158709 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 35158797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 6963433 - 6963532
Alignment:
Q  13 aatatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||||||| |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||| |||| || |||||||    
T  6963433 aatatttgaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaataagtcctaggtcatt 6963532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 38551398 - 38551307
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttgga-agtcaaggaaaacgtgtt 133  Q
    ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || ||||||| | | |||||| |||||||||||    
T  38551398 aagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcattagtacagtcaatgaaaacgtgtt 38551307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 45659560 - 45659502
Alignment:
Q  121 aggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaaccg 179  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||    
T  45659560 aggaaaacgtgtttttcattcaaaaccgtccaaagaacgtattaaaactccactaaccg 45659502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 4048123 - 4048200
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  4048123 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagt 4048200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 16023863 - 16023940
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  16023863 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaatatggaagcctatttatagcctaaaacaagt 16023940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 31093096 - 31093173
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  31093096 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagt 31093173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 33281076 - 33281153
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  33281076 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgtaagcctatttatagcctaaaacaagt 33281153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 40728007 - 40728104
Alignment:
Q  15 tatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||||| |||||| ||||||| || | | ||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  40728007 tatttgaagaaaatgtaagaaaagaggtgatgtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcatt 40728104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 55136655 - 55136732
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  55136655 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagt 55136732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 2013881 - 2013793
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||| |||||||||||||||||||| || |||||||    
T  2013881 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagccaatttatagcctaaaacaagtcctaggtcatt 2013793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 20516682 - 20516734
Alignment:
Q  46 tgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaa 98  Q
    |||||| |||||||||||| |||| ||||||||||||||||||||||||||||    
T  20516682 tgaagaatgaaggaatttgttgaagatgcaagcctatttatagcctaaaacaa 20516734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 51538624 - 51538712
Alignment:
Q  13 aatatttgaaaaaa-tgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||||||||||| || ||||||| || | ||||||||| |||||| ||||| |||| ||| |||| |||||||||||||||||||||    
T  51538624 aatatttgaaaaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcatatttatagcctaaaacaagt 51538712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 39807425 - 39807350
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaa 98  Q
    |||||| ||||||| || | ||||||||| |||||||||||| |||| ||| ||||||||||||||| ||||||||    
T  39807425 aaaatgtaagaaaagaggtgaagtgaagaatgaaggaatttgttgaagatgaaagcctatttatagcgtaaaacaa 39807350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 53632994 - 53632919
Alignment:
Q  123 gaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    |||| ||||||| |||||||||||||| |||||||| ||||||||||| | ||||| ||||||| |||||||||||    
T  53632994 gaaagcgtgtttgtcattcaaaaccgttcaaaaaacgcattaaaactccattaaccggccaaacctttggtgaaac 53632919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 28780923 - 28780846
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | | ||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  28780923 aaaatgtaagaaaagaggtgatgtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagt 28780846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 45462241 - 45462318
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| |||||||||| | ||||||||| |||||  ||||| |||| ||| ||| ||||||||||||||||||||||    
T  45462241 aaaatggaagaaaataggtgaagtgaagaatgaagatatttgttgaagatgaaagtctatttatagcctaaaacaagt 45462318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 52417081 - 52417004
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| ||| || ||||| |||| ||| ||||||||||||||||||||||||||    
T  52417081 aaaatgtaagaaaagaggtgaagtgaagaatgagggtatttgttgaagatggaagcctatttatagcctaaaacaagt 52417004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 16451906 - 16451997
Alignment:
Q  10 aagaatatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||| ||||||| |||||  ||||||| || | ||||||||| |||||| || || |||| ||| ||||||||||||||||||||||||||    
T  16451906 aagaacatttgaagaaaattgaagaaaagaggtgaagtgaagaatgaaggtatctgctgaagatggaagcctatttatagcctaaaacaagt 16451997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 30003601 - 30003691
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagccta--aaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||  |||||||| || |||||||    
T  30003601 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaataaacaagtcctaggtcatt 30003691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 49374308 - 49374418
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaag 122  Q
    |||||| ||||||| || | ||||||||| || |||  |||| |||| ||| ||||||||||||||||||||||||||  | |||||||    ||||||     
T  49374308 aaaatggaagaaaagaggtgaagtgaagaatggaggtttttgttgaagatggaagcctatttatagcctaaaacaagtcataggtcattatacagtcaat 49374407  T
Q  123 gaaaacgtgtt 133  Q
    |||||||||||    
T  49374408 gaaaacgtgtt 49374418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 43842025 - 43841948
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| |||||||||| | || |||||| |||| | ||||| |||| ||| ||| ||||||||||||||||||||||    
T  43842025 aaaatgtaagaaaataggtgaattgaagaatgaatgtatttgttgaagatgaaagtctatttatagcctaaaacaagt 43841948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 45924588 - 45924665
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || |||||||| || |||||| ||||| |||| ||  || |||||||||||||||||||||||    
T  45924588 aaaatggaagaaaagaggttaagtgaggaatgaaggtatttgttgaagattgaaacctatttatagcctaaaacaagt 45924665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 56084122 - 56084179
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||||| |||| ||||||| |||| |||||||| |||||||||||| ||||||||    
T  56084122 aagtgaagaatgaatgaatttgttgaatatgcaagcatatttatagccttaaacaagt 56084179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 56463769 - 56463720
Alignment:
Q  51 agtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  56463769 agtgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagt 56463720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 168699 - 168611
Alignment:
Q  13 aatatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||||||| |||| | ||||||| || | ||||||||| |||||| ||||| |||| ||| ||| |||||||||| |||||||||||    
T  168699 aatatttgaagaaaagggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaaggctatttatagtctaaaacaagt 168611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 38218393 - 38218325
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    ||||||||| || ||| ||||| |||| ||| |||||||||||||| ||||||||||| || |||||||    
T  38218393 aagtgaagaatgtaggtatttgttgaagatggaagcctatttataggctaaaacaagttctaggtcatt 38218325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 45229049 - 45229148
Alignment:
Q  13 aatatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||||||| |||||| ||||||| || | | ||||||| ||||   ||||| |||| ||| || ||||||||||||||||||||||| || |||||||    
T  45229049 aatatttgaagaaaatgtaagaaaagaggtgatgtgaagaatgaatatatttgttgaagatggaatcctatttatagcctaaaacaagtcctaggtcatt 45229148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 40602738 - 40602808
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||| || | ||||||||| ||||||| |||| |||| ||| ||||||||||||||| | ||||||||    
T  40602738 aagaaaagaggtgaagtgaagaatgaaggagtttgttgaagatgtaagcctatttatagcattaaacaagt 40602808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 47985792 - 47985687
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||| ||| ||||||||||| |||||||  | ||| |||||||||| ||     || |||||||||||||||||    
T  47985792 gaagaatgaaggaaaatgttgaagatccaaacctttttatagcctataacaagtcataggtaatttggaagttaa-----acttgtttttcattcaaaac 47985698  T
Q  147 cgtccaaaaaa 157  Q
    |||||||||||    
T  47985697 cgtccaaaaaa 47985687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 35320044 - 35319967
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||| ||| |||| | ||||| |||| ||| ||||||||||||||| ||||||||||    
T  35320044 aaaatggaagaaaagaggtgaagtggagaatgaaagtatttgttgaagatggaagcctatttatagcttaaaacaagt 35319967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 9036247 - 9036175
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaa 95  Q
    |||||| ||||||| || | || |||||| |||| | ||||| |||| ||| |||||||||||||||||||||    
T  9036247 aaaatgtaagaaaagaggtgaaatgaagaatgaatgtatttgttgaagatgaaagcctatttatagcctaaaa 9036175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 52919566 - 52919435
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || |||| || ||||||||| |||||||||  |  || ||||| |||||||||||||| ||||||| ||||||||     
T  52919566 gaagaatgaaggaaaatgttgaagatccaagtctttttatagccaaaaacaagtcatatgtaatttgcaagtcaaggaaaacatgttttt-attcaaaat 52919468  T
Q  147 cgtc-caaaaaacacattaaaactcaactaacc 178  Q
    | ||  |||||||  |||||||||| |||||||    
T  52919467 catcaaaaaaaacgtattaaaactccactaacc 52919435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 74 - 254
Target Start/End: Complemental strand, 29332368 - 29332186
Alignment:
Q  74 caagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaac 173  Q
    ||||||| |||||||||||||||||||  | ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||    
T  29332368 caagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacgtgtttttcgttcaaaaccgtccaaaaaacgtattaaaactccac 29332269  T
Q  174 taaccgcca-aacatttggtgaaacaccacagtccaaaat-aaattgaggttctccggagtatataatctggaatgcatgaag 254  Q
    |||||| || ||| |||||||||||  ||| | |||||||   | ||||| | |||||| | ||||||| |||||||||||||    
T  29332268 taaccgacataacctttggtgaaacgtcaccggccaaaatgttactgagggtttccggattttataatccggaatgcatgaag 29332186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 254
Target Start/End: Complemental strand, 38257561 - 38257371
Alignment:
Q  66 tgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaa 165  Q
    ||||||| |||| || |||||||||||||| ||||  | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  38257561 tgaacatccaagtctttttatagcctaaaataagtcataggtaatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacgtattaa 38257462  T
Q  166 aactcaactaaccgcca-aacatttggtgaaacaccacagtccaaaat-aaattgaggttctccggagtatataatctggaatgcatgaag 254  Q
    ||||| |||||||| || ||| |||||||||||  ||| | |||||||   | ||||| | |||||| | ||||||| |||||||||||||    
T  38257461 aactccactaaccggcataacctttggtgaaacgtcaccggccaaaatgttactgagggtttccggattttataatccggaatgcatgaag 38257371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 35585174 - 35585023
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||| | |||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||    
T  35585174 gaagaatgaaggaaaatgttgaagatccaagcttttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacgtgtttttcattcaaaac 35585075  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||||||||||  |||||||||| ||||| || || ||| |||||||||||    
T  35585074 cgtccaaaaaacgtattaaaactccactaaacggcataacctttggtgaaac 35585023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 7255503 - 7255371
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| ||||||||||||||||||||  ||||||||||||||||    
T  7255503 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacacgtttttcattcaaaac 7255404  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccg 179  Q
    ||||||||||||  |||||||||| ||||||||    
T  7255403 cgtccaaaaaacgtattaaaactccactaaccg 7255371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 26792016 - 26792168
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| |||||||||||||||||||| |||||||||||||||||    
T  26792016 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacttgtttttcattcaaaac 26792115  T
Q  147 cgtcc-aaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||| |||||||  |||||||||| |||||||| || ||| |||||||||||    
T  26792116 cgtccaaaaaaacgtattaaaactccactaaccgacataacctttggtgaaac 26792168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 74 - 197
Target Start/End: Complemental strand, 43749278 - 43749154
Alignment:
Q  74 caagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaac 173  Q
    ||||||| |||||||||||||||||||  | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||  ||    
T  43749278 caagcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacatgtttttcattcaaaaccgtccaaaaaacgtattaaaacttcac 43749179  T
Q  174 taaccgcca-aacatttggtgaaac 197  Q
    |||||| || ||| |||||||||||    
T  43749178 taaccggcataacctttggtgaaac 43749154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 37998691 - 37998842
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| ||||||| |||||||||||  | ||| |||||||||||||||||||||||||||||||||||||     
T  37998691 gaagaatgaaggaaaatgttgaagatccaagcctttttatagtctaaaacaagtcataggtgatttggaagtcaaggaaaacgtgtttttcattcaaaat 37998790  T
Q  147 cgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    || |||||||||  |||||||||| ||||||| ||| ||| |||||||||||    
T  37998791 cggccaaaaaacgtattaaaactccactaaccggcctaacctttggtgaaac 37998842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 82 - 254
Target Start/End: Original strand, 108759 - 108933
Alignment:
Q  82 tttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaaccgcc 181  Q
    |||||||||||||||||||  | ||  |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| || ||||| |    
T  108759 tttatagcctaaaacaagtcataggagatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaatgtattaaaactccacaaaccggc 108858  T
Q  182 a-aacatttggtgaaacaccacagtccaaaat-aaattgaggttctccggagtatataatctggaatgcatgaag 254  Q
    | ||| |||||||||||  ||| | |||||||   ||||||| | ||| || | |||||||||||||||||||||    
T  108859 ataacctttggtgaaacgtcactgaccaaaatgttattgagggtttccagattttataatctggaatgcatgaag 108933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 29739277 - 29739161
Alignment:
Q  82 tttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaaccgcc 181  Q
    |||||| ||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| || |||||||| |    
T  29739277 tttataacctaaaacaagtcataggtaatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacttattaaaattccactaaccggc 29739178  T
Q  182 a-aacatttggtgaaac 197  Q
    | ||| |||||||||||    
T  29739177 ataacctttggtgaaac 29739161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 26188319 - 26188145
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttgga-agtcaa 121  Q
    |||||||||| ||| || | ||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||| || || ||||||  | | | ||||    
T  26188319 aaaatgaaagtaaaaaggtgaagtgaagaatgaaggaatttgttgaacatgcatgcctatttataacctaaaacatgtcctaggtcataagtacaatcaa 26188220  T
Q  122 ggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaac-cgccaaacatttggtgaaa 196  Q
    | ||||| ||||  ||||||||||||||||||| ||| ||||||||| | ||||||  ||||||| ||||||||||    
T  26188219 gcaaaacatgttagtcattcaaaaccgtccaaacaacgcattaaaac-ccactaactggccaaacctttggtgaaa 26188145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 15032620 - 15032545
Alignment:
Q  82 tttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaa 157  Q
    |||||||||||||||||||  | ||| |||||||||||||||||||| | |||||||||||||| |||||||||||    
T  15032620 tttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacttatttttcattcaaaatcgtccaaaaaa 15032545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 25529265 - 25529166
Alignment:
Q  13 aatatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||||||| |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  25529265 aatatttgaagaaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 25529166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 35794457 - 35794545
Alignment:
Q  13 aatatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||||||| |||||| ||||||| |||| | ||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  35794457 aatatttgaagaaaatgtaagaaaagagctgatgtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagt 35794545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 46254855 - 46254943
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  46254855 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 46254943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 14816794 - 14816713
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||| ||||||||||| || |||||||    
T  14816794 aagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttataggctaaaacaagtcctaggtcatt 14816713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 15263790 - 15263709
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||| ||||||||||| || |||||||    
T  15263790 aagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttataggctaaaacaagtcctaggtcatt 15263709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 34848023 - 34847935
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| || || |||| ||| ||||||||||||||| |||||||||| || |||||||    
T  34848023 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatctgttgaagatggaagcctatttatagcataaaacaagtcctaggtcatt 34847935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 1377359 - 1377416
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||||| ||||| |||||| |||| ||| ||||||||||||||||||||| ||||    
T  1377359 aagtgaagaatgaagaaatttgttgaagatggaagcctatttatagcctaaaataagt 1377416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 42321280 - 42321203
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||  ||||| |||| ||| ||||||||||||| ||||||||||||    
T  42321280 aaaatggaagaaaagaggtgaagtgaagaatgaagatatttgttgaagatggaagcctatttataacctaaaacaagt 42321203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 43458176 - 43458252
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| | ||||||||||||||||||||||||    
T  43458176 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgta-gcctatttatagcctaaaacaagt 43458252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 3601113 - 3601045
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaa 98  Q
    ||||||| || | |||||||||  |||| |||||| |||| ||||||| ||||||||||||||||||||    
T  3601113 aagaaaagagttgaagtgaagaacgaagaaatttgttgaagatgcaagtctatttatagcctaaaacaa 3601045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 1852139 - 1852214
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaa 98  Q
    |||||| ||||||| || | ||||||||| ||||||| |||| | || |||||||| ||| |||||||||||||||    
T  1852139 aaaatgtaagaaaagaggtgaagtgaagaatgaaggactttgttcaagatgcaagcttatatatagcctaaaacaa 1852214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 31326761 - 31326691
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||| || | ||||||||| ||||| |||||| |||| |||||| |||||||||||  ||||||||||    
T  31326761 aagaaaagaggtgaagtgaagaatgaagaaatttgttgaagatgcaaacctatttatagtataaaacaagt 31326691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 33950920 - 33951008
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| | |||| ||||| |||| ||  || | ||||||||||||||||||||| || |||||||    
T  33950920 aaaatgtaagaaaagaggtaaagtgaagaataaaggtatttgttgaagatagaaacttatttatagcctaaaacaagtcctaggtcatt 33951008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 31471638 - 31471473
Alignment:
Q  48 aagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaacc 147  Q
    |||| ||||||||  || |||| || ||||||| ||||||| ||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||    
T  31471638 aagaatgaaggaaaatgttgaagatccaagcctctttatagactaaaacaaatcataggtcatttggaagtcaaggaaaacgtgtttttcattcaaaacc 31471539  T
Q  148 gtccaaaaaacacattaaaactcaactaaccg-ccaaacatttggtgaaacaccacagtccaaaat 212  Q
    |||||||||||   |||||||||  ||||||| |||||| |||||||||||| ||| | |||||||    
T  31471538 gtccaaaaaacgtgttaaaactccgctaaccgaccaaacctttggtgaaacagcaccggccaaaat 31471473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 6432494 - 6432391
Alignment:
Q  76 agcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaacta 175  Q
    ||||| |||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  6432494 agcctttttatagcctaaaacaagtcataggtaatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacgtattaaaactccacta 6432395  T
Q  176 accg 179  Q
    ||||    
T  6432394 accg 6432391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 5343853 - 5343724
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||||||||  | ||| |||||||||||||| |||||||||||||||||||||||    
T  5343853 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataggtaatttggaagtcaagaaaaacgtgtttttcattcaaaac 5343754  T
Q  147 cgtccaaaaaacacattaaaactcaactaa 176  Q
    ||||||||||||  |||||||||| |||||    
T  5343753 cgtccaaaaaacgtattaaaactccactaa 5343724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 24856026 - 24855875
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||| ||| ||||||||||||| |||||  | ||| |||||||||||||||||||||||||||||||||||||     
T  24856026 gaagaatgaaggaaaatgttgaagatccaaacctttttatagcctaaagcaagtcataggtaatttggaagtcaaggaaaacgtgtttttcattcaaaat 24855927  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||||||||||  |||||||||| |||||||| || ||| |||||||||||    
T  24855926 cgtccaaaaaacgtattaaaactccactaaccgacataacctttggtgaaac 24855875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 41616128 - 41616024
Alignment:
Q  53 tgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtcca 152  Q
    ||||||||  || |||| || ||||||| ||||||||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||| ||    
T  41616128 tgaaggaaaatgttgaagatccaagcctttttatagcctaaaacaaatcctaggtcatttggaagtcaaggaaaacatgtttttcattcaaaaccgttca 41616029  T
Q  153 aaaaa 157  Q
    |||||    
T  41616028 aaaaa 41616024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 1710507 - 1710356
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaa-gtcaaggaaaacgtgtttttcattcaaaa 145  Q
    |||||||||| |||  || |||| || ||||||| |||||||||||||||||||  | ||| |||||||| |||||||||||| ||||||||||| ||||    
T  1710507 gaagagtgaaagaaaatgttgaagatccaagcctttttatagcctaaaacaagtcataggtaatttggaaagtcaaggaaaacatgtttttcatttaaaa 1710408  T
Q  146 ccgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    | |||| ||||||  |||||||||| ||||||| ||| ||| |||||||||||    
T  1710407 cagtcc-aaaaacgtattaaaactccactaaccggcctaacctttggtgaaac 1710356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 32746863 - 32747015
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||  ||||  | |||  | ||||||||||||||||| |||||||||||||||||    
T  32746863 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaagtaagtcataggtattctggaagtcaaggaaaacttgtttttcattcaaaac 32746962  T
Q  147 cgtcc-aaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    ||||| |||||||  |||||||||| |||||||| || ||| |||||||||||    
T  32746963 cgtccaaaaaaacgtattaaaactccactaaccggcataacctttggtgaaac 32747015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 8197398 - 8197486
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| |||||||||| | ||||||||| |||||| ||||| |||| ||| |||||||||||||| ||||||||||| || |||||||    
T  8197398 aaaatgtaagaaaataggtaaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagtctaaaacaagtcctaggtcatt 8197486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 26279044 - 26279135
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttgga-agtcaaggaaaacgtgtt 133  Q
    ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || ||||||| | | |||||| |||||||||||    
T  26279044 aagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctgggtcattagtacagtcaatgaaaacgtgtt 26279135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 3556611 - 3556699
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||||||||| | || ||| |||| ||||||||||||||||||||| || |||||||    
T  3556611 aaaatggaagaaaagaggtgaagtgaagaatgaaggaatttgttaaagatggaagcatatttatagcctaaaacaagtcctaggtcatt 3556699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 12723661 - 12723749
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| || ||||||||||||||||||||||| || |||||||    
T  12723661 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaaacctatttatagcctaaaacaagtcctaggtcatt 12723749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 12785144 - 12785232
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||  |||||||||||||||||||||||||| || |||||||    
T  12785144 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagattgaagcctatttatagcctaaaacaagtcctaggtcatt 12785232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 37012814 - 37012902
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||| | ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  37012814 aaaatggaagaaaagaggtgaagtgaagaatgaaagtatttgttgaagatggaagcctatttatagcctaaaacaagttctaggtcatt 37012902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 37030409 - 37030321
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||| |||||||||||||||||||||| || |||||||    
T  37030409 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagtctatttatagcctaaaacaagtcctaggtcatt 37030321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 18808971 - 18809048
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||| ||||||||||||||||||||||    
T  18808971 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagactatttatagcctaaaacaagt 18809048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 27114294 - 27114371
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||  ||||| |||| ||| ||||||||||||||||||||||||||    
T  27114294 aaaatggaagaaaagaggtgaagtgaagaatgaagatatttgttgaagatggaagcctatttatagcctaaaacaagt 27114371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 13822220 - 13822143
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | | ||||||| |||||| ||||| |||| ||| || |||||||||||||||||||||||    
T  13822220 aaaatgtaagaaaagaggtgaggtgaagaatgaaggtatttgttgaagatggaaacctatttatagcctaaaacaagt 13822143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 37883434 - 37883491
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||||| |||||| ||||| |||| ||| ||||||||||||||| ||||||||||    
T  37883434 aagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcttaaaacaagt 37883491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 8734684 - 8734771
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| | |  ||| |||||||||||||||||||||||||| || |||||||    
T  8734684 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttcag-atggaagcctatttatagcctaaaacaagtcctaggtcatt 8734771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 15858808 - 15858880
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaa 95  Q
    |||||| ||||||| || | | ||||||| |||||| ||||| |||| ||| |||||||||||||||||||||    
T  15858808 aaaatgtaagaaaagaggtgatgtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaa 15858880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 9715460 - 9715349
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttg-gaagtcaa 121  Q
    |||||| ||||||| || | ||||||||| |||||  ||||| |||| ||| ||| ||||||||||||||||| ||||  | ||||||| | | ||||||    
T  9715460 aaaatggaagaaaagaggtgaagtgaagaatgaagctatttgttgaagatggaagtctatttatagcctaaaaaaagtcataggtcattagtgcagtcaa 9715361  T
Q  122 ggaaaacgtgtt 133  Q
     |||||||||||    
T  9715360 tgaaaacgtgtt 9715349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 29047091 - 29047045
Alignment:
Q  109 atttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaa 155  Q
    |||||||||| ||| |||||||||| |||||||||||| ||||||||    
T  29047091 atttggaagttaagaaaaacgtgttattcattcaaaactgtccaaaa 29047045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 9129490 - 9129429
Alignment:
Q  137 cattcaaaaccgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    ||||||||||| |||||||||  ||||||||||  ||||||| |||||||||| ||||||||    
T  9129490 cattcaaaaccttccaaaaaatgcattaaaactgcactaaccagccaaacattaggtgaaac 9129429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 16513740 - 16513663
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||  ||||||||||||||  ||||||||||    
T  16513740 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaaaattgaagcctatttatagtttaaaacaagt 16513663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 38679600 - 38679523
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| || ||  ||||| |||| ||  ||||||||||||||||||||||||||    
T  38679600 aaaatgtaagaaaagaggtgaagtgaagaatgtagatatttgttgaagattgaagcctatttatagcctaaaacaagt 38679523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 12255 - 12351
Alignment:
Q  82 tttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaaccg 179  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||    
T  12255 tttatagcctaaaacaagt-ctaggtaatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacgtattaaaactccactaaccg 12351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 47 - 197
Target Start/End: Complemental strand, 11838 - 11687
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||| ||||||||  | ||| |||||||||| ||||||||| |||||||||||||||||    
T  11838 gaagaatgaaggaaaatgttgaagatccaagcctttttatagccttaaacaagtcataggtaatttggaagtaaaggaaaacttgtttttcattcaaaac 11739  T
Q  147 cgtccaaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaac 197  Q
    |||||||||||   |||||||||| |||||||| || ||| |||||||||||    
T  11738 cgtccaaaaaaagtattaaaactccactaaccggcataacctttggtgaaac 11687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 24830804 - 24830929
Alignment:
Q  75 aagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacac--attaaaactcaa 172  Q
    |||||| |||||||||||||||||||  | ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||  |||||||||| |    
T  24830804 aagcctttttatagcctaaaacaagtcataggtaatttgaaagtcaaggaaaatgtgtttttcattcaaaaccgtccaaaaaaaacgtattaaaactcca 24830903  T
Q  173 ctaacc-gccaaacatttggtgaaac 197  Q
    |||||| ||| ||| |||||||||||    
T  24830904 ctaaccggcctaacctttggtgaaac 24830929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 23421062 - 23420932
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| |||||||||||||| ||||  | ||| |||||||| ||||||||||| |||||||||||||||||    
T  23421062 gaagaatgaaggaaaatgttgaagatccaagcctttttatagcctaaaaaaagtcataggtaatttggaaatcaaggaaaacatgtttttcattcaaaac 23420963  T
Q  147 cgtccaaaaaacacattaaaactcaactaac 177  Q
    ||| ||||||||  |||||||||| ||||||    
T  23420962 cgttcaaaaaacgtattaaaactccactaac 23420932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 42190597 - 42190702
Alignment:
Q  75 aagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtt-tttcattcaaaaccgtccaaaaaacacattaaaactcaac 173  Q
    |||||| |||||||||||||||||||  | | | |||||||||||||| ||||||| || |||||||||||||||||||||||||  |||||||||  ||    
T  42190597 aagcctttttatagcctaaaacaagtcatagataatttggaagtcaagtaaaacgttttctttcattcaaaaccgtccaaaaaacgtattaaaacttcac 42190696  T
Q  174 taaccg 179  Q
    ||||||    
T  42190697 taaccg 42190702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 31701192 - 31701104
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  31701192 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 31701104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 35684163 - 35684075
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| |||||||| | | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  35684163 aaaatggaagaaaattggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagtactgggtcatt 35684075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 8240135 - 8240058
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  8240135 aaaatggaagaaaaaaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagt 8240058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 23144267 - 23144167
Alignment:
Q  13 aatatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||||||| |||| | ||||||| || | ||||||||| |||||| ||||| |||| ||| ||||||||||||| |||||||||||| || |||||||    
T  23144267 aatatttgaagaaaaaggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttataacctaaaacaagtcctaggtcatt 23144168  T
Q  112 t 112  Q
    |    
T  23144167 t 23144167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 32337800 - 32337888
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||| ||||| || |||||||    
T  32337800 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagcctatttatagcctaaaccaagtcctaggtcatt 32337888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 40105397 - 40105309
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | || |||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  40105397 aaaatggaagaaaagaggtgaattgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcatt 40105309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 43098693 - 43098605
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||| | ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  43098693 aaaatggaagaaaagaggtgaagtgaagaatgaatgtatttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 43098605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 26911677 - 26911602
Alignment:
Q  123 gaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaac-cgccaaacatttggtgaaac 197  Q
    ||||| |||||| ||||||||||||||||| ||||| ||||||||||| ||||||  ||||||| |||||||||||    
T  26911677 gaaaatgtgtttgtcattcaaaaccgtccataaaacgcattaaaactccactaactggccaaacctttggtgaaac 26911602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 39260451 - 39260352
Alignment:
Q  13 aatatttgaa-aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||||||| |||||| ||||||| || | ||||||||| |||| | ||||| |||| ||  |||||||||||||||||||||||||| || |||||||    
T  39260451 aatatttgaagaaaatgtaagaaaagaggtgaagtgaagaatgaatgtatttgttgaagatagaagcctatttatagcctaaaacaagtcctaggtcatt 39260352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 37098323 - 37098400
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||| |||||||||||||||||||||    
T  37098323 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcttatttatagcctaaaacaagt 37098400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 39318743 - 39318666
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||| | |||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  39318743 aaaatggaagaaaagaggtgaagtgaataatgaaggtatttgttgaagatggaagcctatttatagcctaaaacaagt 39318666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 32947069 - 32947157
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||  ||||||| |||||||||||||||||| || |||||||    
T  32947069 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatagaagcctacttatagcctaaaacaagtcctaggtcatt 32947157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 28284460 - 28284514
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaaca 97  Q
    ||||||||| |||||||||||| |||| |||||| |||||||| |||||||||||    
T  28284460 aagtgaagaatgaaggaatttgttgaagatgcaaacctatttacagcctaaaaca 28284514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 20091870 - 20091927
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||||| |||||| ||||| |||| ||| |||||||| |||||||||||||||||    
T  20091870 aagtgaagaatgaaggtatttgttgaagatggaagcctatatatagcctaaaacaagt 20091927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 586538 - 586482
Alignment:
Q  44 agtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||||| |||||| ||||| |||| ||  ||||||||||||||||||||||||||    
T  586538 agtgaagaatgaaggtatttgttgaagatagaagcctatttatagcctaaaacaagt 586482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 627385 - 627441
Alignment:
Q  44 agtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||||| |||||| ||||| |||| ||  ||||||||||||||||||||||||||    
T  627385 agtgaagaatgaaggtatttgttgaagatagaagcctatttatagcctaaaacaagt 627441  T

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Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 6347285 - 6347373
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | || |||||| |||||| ||||| |||| ||| |||| | ||||||||||||||||||| || |||||||    
T  6347285 aaaatggaagaaaagaggtgaaatgaagaatgaaggtatttgttgaagatggaagcatgtttatagcctaaaacaagtcctaggtcatt 6347373  T

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Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 11076218 - 11076306
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| | |||| ||||| |||| ||| ||| |||||||||| ||||||||||| || |||||||    
T  11076218 aaaatggaagaaaagaggtgaagtgaagaattaaggtatttgttgaaaatggaagtctatttatagtctaaaacaagtcctaggtcatt 11076306  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 254
Target Start/End: Original strand, 34949552 - 34949762
Alignment:
Q  47 gaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaac 146  Q
    ||||| ||||||||  || |||| || ||||||| ||||||| |||||||||||  | ||| |||||||||||||||||||| |||||||||||||||||    
T  34949552 gaagaatgaaggaaaatgttgaagatccaagcctttttatagtctaaaacaagtcataggtaatttggaagtcaaggaaaacttgtttttcattcaaaac 34949651  T
Q  147 cgtcc-aaaaaacacattaaaactcaactaaccgcca-aacatttggtgaaacaccacagtccaaaat-aaattgaggttctccggagtatataatctgg 243  Q
    ||||| |||||||  |||||||||| ||||| || || ||| |||||||||||  ||| | |||||||   | ||||| | || ||| | ||||||||||    
T  34949652 cgtccaaaaaaacgtattaaaactccactaaacggcataacctttggtgaaacgtcaccggccaaaatgttactgagggtttctggattttataatctgg 34949751  T
Q  244 aatgcatgaag 254  Q
    |||||||||||    
T  34949752 aatgcatgaag 34949762  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 13036939 - 13037061
Alignment:
Q  74 caagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaac 173  Q
    ||||||| |||||||||||||| ||||  |  || ||||| |||||||||||||||||||||||||||||||||||| |||||||  |||||||||| ||    
T  13036939 caagcctttttatagcctaaaaaaagtcat--gtaatttgaaagtcaaggaaaacgtgtttttcattcaaaaccgtctaaaaaacgtattaaaactccac 13037036  T
Q  174 taaccgcca-aacatttggtgaaac 197  Q
    |||||| || ||| |||||||||||    
T  13037037 taaccggcataacctttggtgaaac 13037061  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 74 - 197
Target Start/End: Original strand, 480366 - 480491
Alignment:
Q  74 caagcctatttatagcctaaaacaagtgcttggtcatttggaagtcaaggaaaacgtgtttttcattcaaaaccgtcc-aaaaaacacattaaaactcaa 172  Q
    ||||||| |||||||||||||||||||  | ||| |||| ||||||||||||||| | |||||||||||||||||||| |||||||  | |||||||| |    
T  480366 caagcctttttatagcctaaaacaagtcataggtaatttagaagtcaaggaaaacttatttttcattcaaaaccgtccaaaaaaacgtactaaaactcca 480465  T
Q  173 ctaaccgcca-aacatttggtgaaac 197  Q
    ||||||| || ||| |||||||||||    
T  480466 ctaaccggcataacctttggtgaaac 480491  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 1778457 - 1778382
Alignment:
Q  123 gaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaacc-gccaaacatttggtgaaac 197  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||    
T  1778457 gaaaacgtgtttgtcattcaaaaccgtccaaaaaacgcattaaaactccactaaccggccaaacctttggtgaaac 1778382  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 303744 - 303832
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  303744 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaaaatggaagcctatttatagcctaaaacaagtcctaggtcatt 303832  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 31318524 - 31318612
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  31318524 aaaatggaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatgaaagcctatttatagcctaaaacaagtcctaggtcatt 31318612  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 439021 - 439132
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttgga-agtcaa 121  Q
    |||||| ||||||| || | ||||||||| |||||| ||||| |||| ||| ||| |||||||||||||||||||||| || ||||||| | | ||||||    
T  439021 aaaatgtaagaaaagaggtgaagtgaagaatgaaggtatttgttgaagatggaagtctatttatagcctaaaacaagtcctaggtcattagtatagtcaa 439120  T
Q  122 ggaaaacgtgtt 133  Q
     |||||||||||    
T  439121 cgaaaacgtgtt 439132  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 31723019 - 31722931
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||| ||||||| || | ||||||||| ||||||  |||| |||| ||| |||||||||||||||||||||||||| || |||||||    
T  31723019 aaaatgtaagaaaagagatgaagtgaagaatgaaggtctttgttgaagatggaagcctatttatagcctaaaacaagtcctaggtcatt 31722931  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 16395305 - 16395382
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||||| |||| | ||||| |||  ||| ||||||||||||||||||||||||||    
T  16395305 aaaatggaagaaaagaggtgaagtgaagaatgaaagtatttgttgacgatggaagcctatttatagcctaaaacaagt 16395382  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 17519863 - 17519920
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    ||||||||| || ||||||||  ||||||||||| | |||||||||||||||||||||    
T  17519863 aagtgaagaatggaggaatttcttgaacatgcaaacatatttatagcctaaaacaagt 17519920  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 31271339 - 31271416
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||| ||||||| || | ||||||| | |||| | ||||| |||| ||| ||||||||||||||||||||||||||    
T  31271339 aaaatggaagaaaagaggtgaagtgaaaaatgaaagtatttgttgaagatggaagcctatttatagcctaaaacaagt 31271416  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 9305049 - 9305013
Alignment:
Q  75 aagcctatttatagcctaaaacaagtgcttggtcatt 111  Q
    |||||||||||||||||||||||||| || |||||||    
T  9305049 aagcctatttatagcctaaaacaagtcctaggtcatt 9305013  T

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Target: scaffold0054 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 19170 - 18980
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagtgcttggtcatttgga-agtcaa 121  Q
    |||||| ||||||| || | ||||||||| |||||||||||| |||| |||  |||||||||||||||||||||||||  | ||||||  | | ||||||    
T  19170 aaaatgtaagaaaagagttgaagtgaagaatgaaggaatttgttgaagatgagagcctatttatagcctaaaacaagtcttaggtcataagtacagtcaa 19071  T
Q  122 ggaaaacgtgtttttcattcaaaaccgtccaaaaaacacattaaaactcaactaaccg-ccaaacatttggtgaaacaccacagtccaaaa 211  Q
     ||| | |||||| ||||||||  ||| ||||||| |  |||||||||| |||||||| |||||||||||||||||| |||| ||| ||||    
T  19070 tgaacatgtgtttgtcattcaatgccgaccaaaaagcgtattaaaactccactaaccgaccaaacatttggtgaaacgccaccgtcgaaaa 18980  T

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Target: scaffold0160 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 17381 - 17311
Alignment:
Q  30 aagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaagt 100  Q
    |||||||||| | ||||||||| |||| ||||||| |||| || ||| |||||||||||||||||||||||    
T  17381 aagaaaataggtgaagtgaagaatgaaagaatttgttgaagatacaaacctatttatagcctaaaacaagt 17311  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 427311 - 427263
Alignment:
Q  43 aagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcct 91  Q
    ||||||||| |||||||| ||| |||| |||||||||||||||||||||    
T  427311 aagtgaagaatgaaggaaattgttgaagatgcaagcctatttatagcct 427263  T

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Target: scaffold1301 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 1645 - 1721
Alignment:
Q  23 aaaatgaaagaaaatagcttaagtgaagagtgaaggaatttggtgaacatgcaagcctatttatagcctaaaacaag 99  Q
    |||||| | |||||||| | || |||||| |||||| ||||| ||||  || |||||||||||||| ||||||||||    
T  1645 aaaatggaggaaaataggtgaactgaagaatgaaggtatttgttgaagttggaagcctatttatagtctaaaacaag 1721  T

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