View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7412_low_2 (Length: 226)
Name: NF7412_low_2
Description: NF7412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7412_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 279640 - 279430
Alignment:
| Q |
4 |
atccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctttcccc-aagtgtttgtatcatttacgaaaacttcggtcatgta |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
279640 |
atccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctttcccccaagtgtttgtatcatttacgacaacttcggtcatgta |
279541 |
T |
|
| Q |
103 |
ccacaagtaatcactagcaccaacggtaacactcttttgatctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtcg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279540 |
ccacaagtaatcactagcaccaacggtaacactcttttgatctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtcg |
279441 |
T |
|
| Q |
203 |
gatgtccatga |
213 |
Q |
| |
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||||||||||| |
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| T |
279440 |
gatgtccatga |
279430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 290085 - 289877
Alignment:
| Q |
4 |
atccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgcttt-ccccaagtgtttgtatcatttacgaaaacttcggtcatgta |
102 |
Q |
| |
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||||||||||| || ||||||||||| ||||| |||||| || |||| | ||||||| |||||| | ||||| |||||||||| |||||||||||||| |
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| T |
290085 |
atccattaatatatgaataaagaataggaccttttgtatcgacgtgcagccttgcttttccccaaatttttgtgtcatttacgactacttcggtcatgta |
289986 |
T |
|
| Q |
103 |
ccacaagtaatcactagcaccaacggtaacactcttttgatctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtcg |
202 |
Q |
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| T |
289985 |
ccataaataatcactagctccagcggtaacattcttttgatttaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgtcttgcattggttcg |
289886 |
T |
|
| Q |
203 |
gatgtccat |
211 |
Q |
| |
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|||| |||| |
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| T |
289885 |
gatgcccat |
289877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 24525139 - 24524931
Alignment:
| Q |
4 |
atccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctttcccc-aagtgtttgtatcatttacgaaaacttcggtcatgta |
102 |
Q |
| |
|
||||||||||| || |||||| |||| | ||| ||| ||||||||||| ||| ||||||| || |||| |||||||||| |||||||||||||| |
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| T |
24525139 |
atccattaatatatgaataaataatagggccttttgcattcacttgcagtgttgatttcccccaaacagttgtgtcatttacgactacttcggtcatgta |
24525040 |
T |
|
| Q |
103 |
ccacaagtaatcactagcaccaacggtaacactcttttgatctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtcg |
202 |
Q |
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||| || ||||||||||| ||| | |||||| |||||||||||||||||| ||||||||||||||||||||| ||| | || ||||||| |||||| || |
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| T |
24525039 |
ccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctggtaaggtgtcttgcattggttca |
24524940 |
T |
|
| Q |
203 |
gatgtccat |
211 |
Q |
| |
|
|||| |||| |
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|
| T |
24524939 |
gatgcccat |
24524931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 24531812 - 24531604
Alignment:
| Q |
4 |
atccattaataaataaataaagaatatgacctgttgtattcacttgcacctttgctttcccc-aagtgtttgtatcatttacgaaaacttcggtcatgta |
102 |
Q |
| |
|
||||||||||| | |||||| |||| | ||| ||| ||||||||||| ||| ||||||| || | |||| |||||||||| |||||||||||||| |
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|
| T |
24531812 |
atccattaatatacgaataaataatagggccttttgcattcacttgcagtgttgatttcccccaaacggttgtgtcatttacgactacttcggtcatgta |
24531713 |
T |
|
| Q |
103 |
ccacaagtaatcactagcaccaacggtaacactcttttgatctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtcg |
202 |
Q |
| |
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||| || ||||||||||| ||| | |||||| |||||||||||||||||| |||||||||||||||||||| ||| | || ||||||| |||||| || |
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| T |
24531712 |
ccataaataatcactagctccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtcccttggcctagtaaggtgtcttgcattggttca |
24531613 |
T |
|
| Q |
203 |
gatgtccat |
211 |
Q |
| |
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|||| |||| |
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|
| T |
24531612 |
gatgcccat |
24531604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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