View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_high_11 (Length: 394)
Name: NF7413_high_11
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 390
Target Start/End: Original strand, 45160157 - 45160524
Alignment:
| Q |
2 |
ttatagcgccttgaatgtgtcatttacataaaataaaatttgtaccagtaaattattgatcacattcatacaaaaaacactaatcactaattatttttaa |
101 |
Q |
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| T |
45160157 |
ttatagcgccttgaatgtgtcatttacataacataaaatttgtaccaataaattattgatcacattcatacaaaaaacactaatcactaattattttt-- |
45160254 |
T |
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| Q |
102 |
aactaattatttttaaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttataatgctcttggtatgttttcaattatatc |
201 |
Q |
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| T |
45160255 |
--------------aaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttatcatgctcttg-----ttttcaattatatc |
45160335 |
T |
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| Q |
202 |
tatttaagtttcaaattcagtcttacaaaaaatttcatatctagtatttgagagttacaaatataacttgtgaggatgaatttatatacatcgttaatga |
301 |
Q |
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| T |
45160336 |
tatttaagtttcaaattcagtctttcaaaaaatttcatatctagtatttgagagttacaaatataacttgttaggatgaacttatatacatcgttaatga |
45160435 |
T |
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| Q |
302 |
attnnnnnnnttctactatttattacatatttaccatttgtaataatttccttttgttgatacttgatattcacaggataacaccaaag |
390 |
Q |
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| T |
45160436 |
attaaaaaaattctgctatttattacatatttaccatttataataatttccttttgttgatacttgatattcacaggataacacaaaag |
45160524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 24128266 - 24128096
Alignment:
| Q |
9 |
gccttgaatgtgtcatttacataaaataaaatttgtaccagtaaattattgatcacattcatacaaaaaacactaatcactaattatttttaaaactaat |
108 |
Q |
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| T |
24128266 |
gccttgaatgtttcatttacataaaat-----ttgtaccaataaattattgatcatattcaaacaaaaaacactaatcactaattattttt--------- |
24128181 |
T |
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| Q |
109 |
tatttttaaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttataatgctcttggtatgttttcaattatat |
200 |
Q |
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| T |
24128180 |
-------aaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttatcatgctcttggtgtgctttcaattatat |
24128096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 189 - 304
Target Start/End: Complemental strand, 24128070 - 24127954
Alignment:
| Q |
189 |
tttcaattatatctatttaagtttcaaattcagtcttacaaaaaatttcatatct--agtatttgagagttacaaatataacttgtgaggatgaatttat |
286 |
Q |
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| T |
24128070 |
tttcaattatatctatttaagtttcaaattcattcttataaaag-tttcatatatttagtatctgagagttacaaatataacttgttaggatgaattcat |
24127972 |
T |
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| Q |
287 |
atacatcgttaatgaatt |
304 |
Q |
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|||| || ||||| |||| |
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| T |
24127971 |
atacgtcattaattaatt |
24127954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 24127792 - 24127741
Alignment:
| Q |
339 |
ttgtaataatttccttttgttgatacttgatattcacaggataacaccaaag |
390 |
Q |
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| T |
24127792 |
ttgtaataatttccttttgttgatacttgatattcacaggttaacaccaaag |
24127741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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