View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_high_12 (Length: 381)
Name: NF7413_high_12
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 5396349 - 5396707
Alignment:
| Q |
18 |
agacatgaaagaaaagttggtacactaagcaccacattgaacaaagtttgaaaataattgacaagaaggaagttgataccgataagagagtgtagacgac |
117 |
Q |
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| T |
5396349 |
agacatgaaagaaaagttggtacactaagcaccacattgaacaaagtttgaaaataattgacaagaaggaagttgataccgataagagaatgtagacgac |
5396448 |
T |
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| Q |
118 |
gcatattcaactgcaaatggaagcagacaagatttatggtccgacgaagatagtactaaaagattgtttgtcgtatgttataaacaaggttgaatactta |
217 |
Q |
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| T |
5396449 |
gcatattcaactgcaaatggaagcagacaagatttatggtccgacgaagatagtactaaaagattgcttgtcgtatgttgtaaacaaggttgaatactta |
5396548 |
T |
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| Q |
218 |
cattttgaaccctaatcgtcaactgaaaacgaattcaagctataaaaatataagtgtatcttccatgcttatttttctttaaatttcaacaatgtagtca |
317 |
Q |
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| T |
5396549 |
cattttgaaccctaatcatcaactgaaaacgaattcaagctataagaatataagtgtatcttccatgcttatttttctttaaatttcaacaatgtagtca |
5396648 |
T |
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| Q |
318 |
catttcaattctaagttattttctggtatgaacgtttttgctgctgtgtctttgtttct |
376 |
Q |
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| T |
5396649 |
catttcaattctaagttattttctggtgtgaacgtttttgctgctgtgtttttgtttct |
5396707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 5392851 - 5393014
Alignment:
| Q |
22 |
atgaaagaaaagttggtacactaagcaccacattgaacaaagtttgaaaataattgacaagaaggaagttgataccgataagagagtgtagacgacgcat |
121 |
Q |
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| T |
5392851 |
atgaaagaaaagtcggtacattaagcaccgcattgaacaaagtttgaacttatttgac---aaggaagttgacactaataagagagtgtagacgacgcat |
5392947 |
T |
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| Q |
122 |
attcaactgcaaatggaagcagacaagatttatggtccgacgaagatagtactaaaagattgtttgtc |
189 |
Q |
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| T |
5392948 |
att-aaccgtcaatggaagcaaacaagatttattgtttgacaaaaatagtactgaaagattgcttgtc |
5393014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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