View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7413_high_19 (Length: 300)

Name: NF7413_high_19
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7413_high_19
NF7413_high_19
[»] chr8 (1 HSPs)
chr8 (2-300)||(11483888-11484186)
[»] chr5 (5 HSPs)
chr5 (246-287)||(26798336-26798377)
chr5 (254-287)||(26801252-26801285)
chr5 (254-287)||(26808802-26808835)
chr5 (254-287)||(26816192-26816225)
chr5 (254-287)||(26823829-26823862)
[»] chr3 (4 HSPs)
chr3 (246-287)||(10218865-10218906)
chr3 (246-287)||(10255774-10255815)
chr3 (254-287)||(10227875-10227908)
chr3 (245-285)||(10499740-10499780)
[»] chr4 (1 HSPs)
chr4 (5-65)||(50828251-50828310)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 300
Target Start/End: Original strand, 11483888 - 11484186
Alignment:
Q  2 caacctgtgaggcgatgactatccttacttataaacacttgtttagactcatctctcatccaatataagatttttaacgcactccatcacatccaacact 101  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||| ||||    
T  11483888 caacctgtgagacgatgattatccttacttataaacacttgtttagactcatctctcatccaatataagatttttaacgcattctatcacgtccagcact 11483987  T
Q  102 attttacttgatgcgtgtatctact-caaacaaaactatcctcatcgaaatttctaaaaattttcatccatacataattgatcattcattgcattggtcc 200  Q
    ||| |||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||||| |||  | || |||||||||||||||||||||    
T  11483988 attgtacttgatgcgtatatctacttcaaagaaaactatcctcatcgaaatttctaacaattttcatc-ataattgatcgatcattcattgcattggtcc 11484086  T
Q  201 acacgctagaatttatctatcattgaaacttcaaagatgaaaattgtgcaacttttctttgtataattattattttgtcagatgtagatacaattattat 300  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11484087 acacgctagaatttatttatagttgaaacttcaaagatgaaaattgtgcaacttttctttgtatatttattattttgtcagatgtagatacaattattat 11484186  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 26798336 - 26798377
Alignment:
Q  246 gtgcaacttttctttgtataattattattttgtcagatgtag 287  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  26798336 gtgcaacatttctttgtatatttattattttgtcagatgtag 26798377  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 26801252 - 26801285
Alignment:
Q  254 tttctttgtataattattattttgtcagatgtag 287  Q
    |||||||||||| |||||||||||||||||||||    
T  26801252 tttctttgtatatttattattttgtcagatgtag 26801285  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 26808802 - 26808835
Alignment:
Q  254 tttctttgtataattattattttgtcagatgtag 287  Q
    |||||||||||| |||||||||||||||||||||    
T  26808802 tttctttgtatatttattattttgtcagatgtag 26808835  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 26816192 - 26816225
Alignment:
Q  254 tttctttgtataattattattttgtcagatgtag 287  Q
    |||||||||||| |||||||||||||||||||||    
T  26816192 tttctttgtatatttattattttgtcagatgtag 26816225  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 26823829 - 26823862
Alignment:
Q  254 tttctttgtataattattattttgtcagatgtag 287  Q
    |||||||||||| |||||||||||||||||||||    
T  26823829 tttctttgtatatttattattttgtcagatgtag 26823862  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 10218865 - 10218906
Alignment:
Q  246 gtgcaacttttctttgtataattattattttgtcagatgtag 287  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  10218865 gtgcaacatttctttgtatatttattattttgtcagatgtag 10218906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 10255774 - 10255815
Alignment:
Q  246 gtgcaacttttctttgtataattattattttgtcagatgtag 287  Q
    ||||||| |||||||||||| |||||||||||||||||||||    
T  10255774 gtgcaacatttctttgtatatttattattttgtcagatgtag 10255815  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 10227875 - 10227908
Alignment:
Q  254 tttctttgtataattattattttgtcagatgtag 287  Q
    |||||||||||| |||||||||||||||||||||    
T  10227875 tttctttgtatatttattattttgtcagatgtag 10227908  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 10499740 - 10499780
Alignment:
Q  245 tgtgcaacttttctttgtataattattattttgtcagatgt 285  Q
    |||| |||||||||||||||| ||||||||| |||||||||    
T  10499740 tgtgaaacttttctttgtatatttattatttagtcagatgt 10499780  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 50828251 - 50828310
Alignment:
Q  5 cctgtgaggcgatgactatccttacttataaacacttgtttagactcatctctcatccaat 65  Q
    ||||||||| ||||||||  |  |||||||||||||||||||| | |||||||||||||||    
T  50828251 cctgtgaggtgatgactactcccacttataaacacttgtttaggc-catctctcatccaat 50828310  T

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