View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_high_3 (Length: 492)
Name: NF7413_high_3
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 5429097 - 5429435
Alignment:
| Q |
19 |
attacaaccttatatttaatgctacatagccgtctgaaaatgactcttattattattactacactttgtccnnnnnnnnctttctatactcttcttgtac |
118 |
Q |
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| T |
5429097 |
attacaaccttatatttaatgctacatagccgtctgaaaatgactcttattattattactacactttgtccttttttttctttctatactcttcttgtac |
5429196 |
T |
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| Q |
119 |
atattatcatcataaaaaatattcaaccttatgtttcacccttgtgcttcaagacttcaaagtcaataacaagtttcaagaacaagagaagnnnnnnnca |
218 |
Q |
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| T |
5429197 |
atattatcatcataaaaaatattcaaccttatgtttcacccttgtgcttcaagacttcaaagtcaataacaagtttcaagaacaagagaagaaaaaaata |
5429296 |
T |
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| Q |
219 |
agaagaagaaagtggagtgnnnnnnnnncttcttctttgatatttcaaagttcaactatgtttggtcttggatgaaagaaagtgtctgaaaatttcttag |
318 |
Q |
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| T |
5429297 |
agaagaagaaagtggagtg--tttttttcttcttctttgatatttcaaagttcaactatgcttggtcttggatgaaagaaagtgtctgaaaatttcttag |
5429394 |
T |
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| Q |
319 |
cttcagagtttctttgcaggttctattcatcttccttctga |
359 |
Q |
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| T |
5429395 |
cttcagagtttctttgcaggttctattcatcttccttctga |
5429435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 411 - 481
Target Start/End: Original strand, 5429487 - 5429557
Alignment:
| Q |
411 |
aaattgaagataaatgattaaagctttgctcaaattctaatatctctcaattaattaaggtttttgttctt |
481 |
Q |
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| T |
5429487 |
aaattgaagataaatgattaaagctttgctcaaattctaatatctctcaattaattaaggtttttgttctt |
5429557 |
T |
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