View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_high_31 (Length: 219)
Name: NF7413_high_31
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_high_31 |
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| [»] scaffold0248 (1 HSPs) |
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Alignment Details
Target: scaffold0248 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 12969 - 12769
Alignment:
| Q |
1 |
gggtatgcatctatgtgaactattactacctaaatccaagcctaataatcaatgatagagttacaagcttggtattctgaatcatggtggccgaaattga |
100 |
Q |
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| T |
12969 |
gggtatgcatctatgtgaactattactacctaaatccaagcctaataatcaatgatagagttacaagcttggtattctgaatcatggtggccgaaattga |
12870 |
T |
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| Q |
101 |
acgacaatgacaatcttgtctcggtcctaacaatcttaatttggaatgcatatccctgcaacatattgcacttagttttggacaatatccttgtggaggg |
200 |
Q |
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| T |
12869 |
acgacaatgacaatcttgtctcggtcctaacaatcttaatttggaatgcatatccctgcaacatgctgcacttagttttggacaatacccttgtggaggg |
12770 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
12769 |
t |
12769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 32798511 - 32798324
Alignment:
| Q |
12 |
tatgtgaactattactacctaaatccaagcctaataatcaatgatagagttacaagcttggtattctgaatcatggtggccgaaattgaacgacaatgac |
111 |
Q |
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| T |
32798511 |
tatgtgaactattactacccaaatccaagcctaataatcaatggtagagttacaagcttggtattctgaatcatggtggccgaaattgaacaacaattac |
32798412 |
T |
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| Q |
112 |
aatcttgtctcggtcctaacaatcttaatttggaatgcatatccctgcaacatattgcacttagttttggacaatatccttgtggagggt |
201 |
Q |
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| T |
32798411 |
aatcttgtctcggtcctaacaatcttaatttggaatgcatctgc--gcaacatgctgcacttagttttggacaatacccttgtggagggt |
32798324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 32307439 - 32307587
Alignment:
| Q |
50 |
caatgatagagttacaagcttggtattctgaatcatggtggccgaaattgaacgacaatgacaatcttgtctcggtcctaacaatcttaatttggaatgc |
149 |
Q |
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| T |
32307439 |
caatgatagagtta-aagcttggtattctgaatcatggtgaccgaaattgaacaacaatgacaatcttgtctcggtcctaacaatcttaatttggaatgc |
32307537 |
T |
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| Q |
150 |
atatccctgcaacatattgcacttagttttggacaatatccttgtggagggt |
201 |
Q |
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| T |
32307538 |
atctgc--gcaacatgctgcacttagttttggacaatacccttgtggagggt |
32307587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 32804066 - 32803977
Alignment:
| Q |
110 |
acaatcttgtctcggtcctaacaatcttaatttggaatgcatatccctgcaacatattgcacttagttttggacaatatccttgtggagggt |
201 |
Q |
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| T |
32804066 |
acaatcttgtctcggtcctaacaatcttaatttggaatgcatctgc--gcaacatgctgcacttagttttggacaatacccttgtggagggt |
32803977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 7437230 - 7437112
Alignment:
| Q |
79 |
gaatcatggtggccgaaattgaacgacaatgacaatcttgtctcggtcctaacaatcttaatttggaatgcatatccctgcaacatattgcacttagttt |
178 |
Q |
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| T |
7437230 |
gaatcatggtggccgagattgaacgacagtgacaatcttgtccaagtcctaacaatcttaatttggaatgc--atccgcgcaacatgctgcacttaattt |
7437133 |
T |
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| Q |
179 |
tggacaatatccttgtggagg |
199 |
Q |
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|||||| || |||| |||||| |
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| T |
7437132 |
tggacagtacccttatggagg |
7437112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 7437336 - 7437261
Alignment:
| Q |
11 |
ctatgtgaactattactacctaaatccaagcctaataatcaatg--atagagttacaagcttggtattctgaatca |
84 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| || |||||| |
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| T |
7437336 |
ctatgtgaactattactacccaaatccaagcctaataatcaatgacagagagttacaagcttggtactccgaatca |
7437261 |
T |
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