View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_high_6 (Length: 457)
Name: NF7413_high_6
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 1606190 - 1605746
Alignment:
| Q |
1 |
ggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |
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| T |
1606190 |
ggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatg |
1606091 |
T |
|
| Q |
101 |
gcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggaccaacatggttggctacaactactgtgcca |
200 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606090 |
gcctggttatcatgtgatatcaaaccctaatgaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctacaactactgtgcca |
1605991 |
T |
|
| Q |
201 |
tttacatctggtctttgatcatttatgttgtgctatagctatttcttcattgcctcagttattgtacctaattctttgtaattaagttcattgtaattct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1605990 |
tttacatctggtctttgatcatttatgttgtgctatagctatttcttcattgcctcagttattgtacttaattctttgtaattaagttcattgtaattct |
1605891 |
T |
|
| Q |
301 |
tgtaagagcatgctcatattcttttgtacactgcaagagatattctttttcatattcatataatcnnnnnnnnnnnnttattcatattcatataaacaat |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||| | |
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| T |
1605890 |
tgtaagagcatgctcatattcttttgtacactgcgagagatattctttttcatattcatatactc---aaaaaaatattattcatattcatataaacatt |
1605794 |
T |
|
| Q |
401 |
atcgttgtaaatcatatcttgagtttaagggaagctattaagaataat |
448 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1605793 |
atcgttgtaaatcatatcttgagtttaagggaagctattaagaataat |
1605746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 1623312 - 1622866
Alignment:
| Q |
1 |
ggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaatg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |||| || || ||||| |
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|
| T |
1623312 |
ggtctccatggggtgacacagattttgctcaagatacattgtattatggagagtatgaaaactatggacctggttcatcaacaacaaatagagtaaaatg |
1623213 |
T |
|
| Q |
101 |
gcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggaccaacatggttggctacaactactgtgcca |
200 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
1623212 |
gcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctacaactaccgtgcca |
1623113 |
T |
|
| Q |
201 |
tttacatctggtctttgatcatttatgttgtgctatagctatttcttcattgcctcagttattgtacctaattctttgtaattaagttcattgtaattct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | | |||| |||||||||| |||||||||||||||||||||||||||||| | |
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|
| T |
1623112 |
tttacatctggtctttgatcatttatgttgtgctatagctatttctttactacctccgttattgtacttaattctttgtaattaagttcattgtaattat |
1623013 |
T |
|
| Q |
301 |
tgtaagagcatgctcatattcttttgtacactgcaagagatattctttttcatattcatataatcnnnnnnnnnnnnttattcatattcatataaacaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| || ||||||||||||||||||||| | |
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| T |
1623012 |
tgtaagagcatgctcatattcttttgtacactttgagagatattatttttcatagtcatatactc--ataaaaaatattattcatattcatataaacatt |
1622915 |
T |
|
| Q |
401 |
atcgttgta-aatcatatcttgagtttaagggaagctattaagaataat |
448 |
Q |
| |
|
||||||||| ||||||| |||||||| || | |||||||||||||||| |
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|
| T |
1622914 |
atcgttgtacaatcatacattgagtttgagaggagctattaagaataat |
1622866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 1629488 - 1629186
Alignment:
| Q |
1 |
ggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1629488 |
ggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaatagggtgaaatg |
1629389 |
T |
|
| Q |
101 |
gcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggaccaacatggttggctacaactactgtgcca |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1629388 |
gcctggttatcatgtgatatcaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggaccaacatggttggctacaactactgtgcca |
1629289 |
T |
|
| Q |
201 |
tttacatctggtctttgatcatttatgttgtgctatagc--tatttcttcattgcctcagttattgtacctaattctttgtaattaagttcattgtaatt |
298 |
Q |
| |
|
|||||||||||||||||||||||| | || || |||||| ||| |||||||| ||| ||||| ||| || || ||||||||||| |||||||||||| |
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|
| T |
1629288 |
tttacatctggtctttgatcatttgtattttggtatagctatatctcttcattaattcaattattctacatagttatttgtaattaaattcattgtaatt |
1629189 |
T |
|
| Q |
299 |
ctt |
301 |
Q |
| |
|
||| |
|
|
| T |
1629188 |
ctt |
1629186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 10821210 - 10821433
Alignment:
| Q |
1 |
ggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || || |
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|
| T |
10821210 |
ggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacaacaaacagggtaaattg |
10821309 |
T |
|
| Q |
101 |
gcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggaccaacatggttggctacaactactgtgcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
10821310 |
gcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtccaacatggttggctaaaactactgtgcca |
10821409 |
T |
|
| Q |
201 |
tttacatctggtctttgatcattt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10821410 |
tttacatctggtctttgatcattt |
10821433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 18781006 - 18780565
Alignment:
| Q |
1 |
ggtctccatggggtgacactgattttgctcaagacacattgtattatggagagtatgagaattatggacctggttcatcaacagcaaacagggtgaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||| |
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|
| T |
18781006 |
ggtctccatggggtgacactgattttgctcaagacacattgtattatggcgagtatgagaattatggacctggttcatcaacagcaaatagagtaaaatg |
18780907 |
T |
|
| Q |
101 |
gcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggaccaacatggttggctacaactactgtgcca |
200 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
18780906 |
gcctggttatcatgcgataacaaaccctaaggaagcatcaaagtttacggttgctggactcattactggaccaacatggctggctacaactactgtgcca |
18780807 |
T |
|
| Q |
201 |
tttacatctggtctttgatcatttatgttgtgctatagctatttcttcattgcctcagttattgtacctaattctttgtaattaagttcattgtaattct |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
18780806 |
tttacatctggtctttgatcttttatgttgtgctatagctatttcttcattgcttcaattattgtacttaattctttgtaattaaattcattgtaattct |
18780707 |
T |
|
| Q |
301 |
tgtaagagcatgctcatattcttttgtacactgcaagagatattctttttcatattcatataatcnnnnnnnnnnnnttattcatattcatataaacaat |
400 |
Q |
| |
|
||||||||||| | |||||||||||||||| ||| |||||||||| |||||||||||||||| || ||||||||||||||||||||| | |
|
|
| T |
18780706 |
tgtaagagcatacccatattcttttgtacattgcgagagatattc-ttttcatattcatatactc--ataaaaaatattattcatattcatataaacatt |
18780610 |
T |
|
| Q |
401 |
atcgttgta-aatcatatcttgagtttaagggaagctattaagaa |
444 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
18780609 |
atcgttgtacaatcataccttgagtttgagggaagctattaagaa |
18780565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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