View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_low_1 (Length: 594)
Name: NF7413_low_1
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 283 - 581
Target Start/End: Complemental strand, 19386462 - 19386160
Alignment:
| Q |
283 |
agtgatatgtaaagcaattaatttccttcaagtattttattttcccttccaattagctannnnnnnnnnnn----cttttcaatttcttgtatgtgggtt |
378 |
Q |
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| T |
19386462 |
agtggtatgtaaagcaattaatttccttcaagtattttattttcccttccaatttgcttttttttttttttttttcttttcaatttcttgtatgtgggtt |
19386363 |
T |
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| Q |
379 |
taccattcaactagaaggtcctgaaatacctaataaagctgattttgaannnnnnnctttaaaaagcattatctctcttgacttggtcaaaagtaaaggc |
478 |
Q |
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| T |
19386362 |
taccattcaactagaaggtcctgaaatacctaataaagctgattttgaattttttcttttaaaaagcattatctctctcgacttggtcaaaagtaaaggc |
19386263 |
T |
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| Q |
479 |
tataaaatttgtggcatctgagctaccttgagggtcaaagtggaaacttcactataacttagaagggtcacagtggtgcacaaatttcactataatcgac |
578 |
Q |
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| T |
19386262 |
tataaaatttgtggcatctgagctaccttgagggtcaaagtggaaacttcactataacttagaagggtcacagtggtgcacaaatttcactataatcgac |
19386163 |
T |
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| Q |
579 |
ttc |
581 |
Q |
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| T |
19386162 |
ttc |
19386160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 19386748 - 19386573
Alignment:
| Q |
19 |
aactcagcgtgagttaactcaaattgggttattttatatnnnnnnnncatatcgttttaaaagaaaaccaaagaaaccatgtttgtaagaaagctttatt |
118 |
Q |
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| T |
19386748 |
aactcagcgtgagttaactcaaattgggttattttatataaaaaaaacatatcgttttaaaagaaaaccaaagaaaccatgtttgtaagaaagctttatt |
19386649 |
T |
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| Q |
119 |
gcctaattgattgatgtgttggcaaatagaaagtttgtagttaatggtgggagtcacattctgttcatccacccat |
194 |
Q |
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| T |
19386648 |
gcctaattgattgatatgttggcaaatagaaagtttgtagttaatggtgggagtcacattctgttcatccacccat |
19386573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 357 - 519
Target Start/End: Complemental strand, 19432733 - 19432572
Alignment:
| Q |
357 |
ttcaatttcttgtatgtgggtttaccattcaactagaaggtcctgaaatacctaataaagctgattttgaannnnnnncttt-aaaaagcattatctctc |
455 |
Q |
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| T |
19432733 |
ttcaatttcttgtgtgtgggtttaccattcaactagaaggacctgaaatacctaataaagttgattttgaattttcttctttaaaaaagtattaattcgc |
19432634 |
T |
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| Q |
456 |
ttgacttggtcaaaagtaaaggctataaaatttgtggcatctgagctaccttgagggtcaaagt |
519 |
Q |
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| T |
19432633 |
ttgacttggtcaaaagtaaa-gctat-acatttgtggcatctcaactacctggagggtctaagt |
19432572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 43148840 - 43148764
Alignment:
| Q |
88 |
aaagaaaccatgtttgtaagaaagctttattgcctaattgattgatgtgttggcaaatagaaagtttgtagttaatg |
164 |
Q |
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| T |
43148840 |
aaagaaaccatgtttctacacaagctctattgccttattgactgatgtgttggcaaatagaaagcttgtagttaatg |
43148764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 17728856 - 17728913
Alignment:
| Q |
357 |
ttcaatttcttgtatgtgggtttaccattcaactagaaggtcctgaaatacctaataa |
414 |
Q |
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| T |
17728856 |
ttcaatttcttgtatacgggtttatcattcaactagagggacctgaaatacctaataa |
17728913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 19030085 - 19030142
Alignment:
| Q |
357 |
ttcaatttcttgtatgtgggtttaccattcaactagaaggtcctgaaatacctaataa |
414 |
Q |
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| T |
19030085 |
ttcaatttcttgtatacgggtttatcattcaactagagggacctgaaatacctaataa |
19030142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 19386510 - 19386476
Alignment:
| Q |
257 |
tagggaagactttgaattttggagttagtgatatg |
291 |
Q |
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| T |
19386510 |
tagggaagactttgaattttggagttagtgatatg |
19386476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 4475269 - 4475364
Alignment:
| Q |
73 |
ttttaaaagaaaaccaaagaaa----ccatgtttgtaagaaagctttattgcctaattgattgatgtgttggcaaatagaaagtttgtagttaatg |
164 |
Q |
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| T |
4475269 |
ttttaagagaaaaccaaagaaagcaaccatgtttgtaagcaagctctattgccttattgattgatgggttgccaaatagaaagcttgtagttaatg |
4475364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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