View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_low_10 (Length: 410)
Name: NF7413_low_10
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 144 - 405
Target Start/End: Complemental strand, 41696312 - 41696051
Alignment:
| Q |
144 |
tctatatgtagtagtactaacaaaaccaaatataacaacatagagattggaataaaaatggtagtttagtggtattaactgcatagaaagtggtacaaat |
243 |
Q |
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| T |
41696312 |
tctatatgtagtagtactaacaaaaccaaatatagcaacatagagattggaataaaaatggtagtttagtggtattaactgcatagagagtggtacaaat |
41696213 |
T |
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| Q |
244 |
acaatttcaagactaaccgaatctctcaaaaattatacatacattttctgatcctctttctctctttcgttctgttacatttccctcacattttcttatc |
343 |
Q |
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| T |
41696212 |
acaatttcaagactaaccgaatctctcaaaaattatacatacattttctgatcctctttctctctttcgttctgttacatttccctcacattttcttatc |
41696113 |
T |
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| Q |
344 |
catttgaaacctccccacatccacatcactctagtctctagccagtgtacgattttcatttc |
405 |
Q |
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| T |
41696112 |
catttgaaacctccccacattcacatcattgtagtctctaatcagtgtatgattttcatttc |
41696051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 41697011 - 41696886
Alignment:
| Q |
19 |
gtcaagacttcgaggttgatttacgcattgtagtaaattcatcttgattaaaaatatctcattatcatgcatcttatgtgttcttttttgcaggttctaa |
118 |
Q |
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| T |
41697011 |
gtcaagacttggaggttgatttacgcattgtagtaaattcatcttgattgaaaatatctcattatcatgcatcttatgtgttcttttttgcaggttctaa |
41696912 |
T |
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| Q |
119 |
aagaaagtccgcaagaaatattgact |
144 |
Q |
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| T |
41696911 |
aagaaagtccgcaagaaatattgact |
41696886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 41693155 - 41693060
Alignment:
| Q |
35 |
tgatttacgcattgtagtaaattcatcttgattaaaaatatctcattatcatgcatcttatgtgttcttttttgcaggttctaaaagaaagtccgc |
130 |
Q |
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| T |
41693155 |
tgattaacacattgtagtaatgtcaccttgattcaaaatacctccttatcttgcatcttttgtgttcttttttgcagattctagaaggaagtccgc |
41693060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 41698471 - 41698423
Alignment:
| Q |
158 |
tactaacaaaaccaaatataacaacatagagattggaataaaaatggta |
206 |
Q |
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| T |
41698471 |
tactaacaaaaccaaatataacaatagagagagtggaataaaaatggta |
41698423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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