View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7413_low_11 (Length: 404)

Name: NF7413_low_11
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7413_low_11
NF7413_low_11
[»] chr7 (5 HSPs)
chr7 (5-387)||(46130361-46130756)
chr7 (5-234)||(46703342-46703571)
chr7 (34-234)||(46124551-46124751)
chr7 (252-387)||(46703142-46703277)
chr7 (253-387)||(46124352-46124486)


Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 5 - 387
Target Start/End: Complemental strand, 46130756 - 46130361
Alignment:
Q  5 gaaaaaagacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgcgggcaaaaatttccctcaaggatagcttgaa 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46130756 gaaaaacgacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgcgggcaaaaatttccctcaaggatagcttgaa 46130657  T
Q  105 ccattttgcctgaaccatcctgagtaagccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccagg 204  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46130656 ccattttgcctgaaccatcccgagtaatccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccagg 46130557  T
Q  205 caatgctggtaagatctgaaaaggataacaaaaccatttctaaattc--------------attatataggatatgctaaatttactgcacatgctatcc 290  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||    
T  46130556 caatgctggtaagatctgaaaa-aataacaaaaccatttctaaattcattatatttattaaattatataggatatgctaaatttactgcacatgctatcc 46130458  T
Q  291 ttgcaaacttttcccaacctgatcctcaagagttagtggaagcttcccaggaataacgttggcaaaagcccatatagcaatcctccatgtagatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46130457 ttgcaaacttttcccaacctgatcctcaagagttagtggaagcttcccaggaataacgttggcaaaagcccatatagcaatcctccatgtagatttt 46130361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 46703571 - 46703342
Alignment:
Q  5 gaaaaaagacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgcgggcaaaaatttccctcaaggatagcttgaa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  46703571 gaaaaaagacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgtgggcaaaaatttccctcaacgatagcttgaa 46703472  T
Q  105 ccattttgcctgaaccatcctgagtaagccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccagg 204  Q
    |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||     
T  46703471 ccatttcgtctgaacaatcctgagtaagccagtagagaatagagcatgcatatagttgaactgattcatcaggcatcaataagagttcccgaaggccaga 46703372  T
Q  205 caatgctggtaagatctgaaaaggataaca 234  Q
    ||||||||||||||||||||||||||||||    
T  46703371 caatgctggtaagatctgaaaaggataaca 46703342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 34 - 234
Target Start/End: Complemental strand, 46124751 - 46124551
Alignment:
Q  34 taatcagtcaaggacttacagtagtaactctacaagtcgcgggcaaaaatttccctcaaggatagcttgaaccattttgcctgaaccatcctgagtaagc 133  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||| ||||||| | |||||||| |    
T  46124751 taatcaatcaaggacttacagtagtaactctacaagtcgtgggcaaaattttgcctcaacgatagcttgaaccattttgtctgaacctttctgagtaaac 46124652  T
Q  134 cagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataagagttcccgaaggccaggcaatgctggtaagatctgaaaaggataac 233  Q
    ||| |||| | |  |||||||||||||| ||||  ||||||||||||||||||||| ||| ||||||||| |||||||||||  ||||||||| ||||||    
T  46124651 caggagaggagatggcatgcatatagtataacttcttcatcaggcatcaataagagctcctgaaggccagacaatgctggtagcatctgaaaaagataac 46124552  T
Q  234 a 234  Q
    |    
T  46124551 a 46124551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 252 - 387
Target Start/End: Complemental strand, 46703277 - 46703142
Alignment:
Q  252 attatataggatatgctaaatttactgcacatgctatccttgcaaacttttcccaacctgatcctcaagagttagtggaagcttcccaggaataacgttg 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||  || |||||| ||||    
T  46703277 attatataggatatgctaaatttactgcacatgctatccttgcaaagttttcccaacctgatcctcaagagttagaggaggcttttcacgaataatgttg 46703178  T
Q  352 gcaaaagcccatatagcaatcctccatgtagatttt 387  Q
     |||||||||||||||||||||||||||||||||||    
T  46703177 acaaaagcccatatagcaatcctccatgtagatttt 46703142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 387
Target Start/End: Complemental strand, 46124486 - 46124352
Alignment:
Q  253 ttatataggatatgctaaatttactgcacatgctatccttgcaaacttttcccaacctgatcctcaagagttagtggaagcttcccaggaataacgttgg 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||  || |||| ||  || | | ||||     
T  46124486 ttatataggatatgctaaatttactgcacatgctatccttgcaaatttttcccaacctgattctgaagagttagaagaggctttccgcgagtgaagttga 46124387  T
Q  353 caaaagcccatatagcaatcctccatgtagatttt 387  Q
     |||||||||| |||||||  ||||||||||||||    
T  46124386 aaaaagcccatgtagcaatattccatgtagatttt 46124352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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