View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_low_14 (Length: 371)
Name: NF7413_low_14
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 5664920 - 5665269
Alignment:
| Q |
10 |
aagaatatcaggagagtccatggaatataaaatggcatgctcataatttaagttagaaaaagcctttgtgcattcatctatatgagcgaaattgtaatat |
109 |
Q |
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| T |
5664920 |
aagaaaatcaggagagtccatggaatataaaatggcatgctcataatttaagttagaaaaagtctttgggcattcatctatatgagcgaaattgtaatat |
5665019 |
T |
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| Q |
110 |
tttctctatgagagatactagatgatgttgtaacatgttttgtaattgcctaggttggaagaataaattcgaagggttctaaaataaagatgaatgtcct |
209 |
Q |
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| T |
5665020 |
tttctctatgagagatactagatgatgttgtaacatgttttgtaattgcctaggttggaagaataaattcgaagggttctaaaataaagatgaatctcct |
5665119 |
T |
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| Q |
210 |
tgcgacataaatttacaaaggtgaaaatgcgtaagaggctgatgtgtaccttacttttgaagaatccctttgcaactcattatcctgctagtttttacaa |
309 |
Q |
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| T |
5665120 |
tgcgacataaatttacaaaggtgaaaatgggtaagaggctgatgtgtaccttacttttgaagaatccctttgcaactcattatcctgctagtttttacaa |
5665219 |
T |
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| Q |
310 |
agttacttttttaaactacttttattcatactatatatattgatataatt |
359 |
Q |
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| T |
5665220 |
agttacttttttaaactacttttattcatgctatatatattgatataatt |
5665269 |
T |
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