View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_low_18 (Length: 322)
Name: NF7413_low_18
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 9828174 - 9828480
Alignment:
| Q |
1 |
tcacaatcagagtaagttgcagttttcacttattatcctagtttatgcacatgaaactgacaactagttatactactatgggttagaatgaatacatgca |
100 |
Q |
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| T |
9828174 |
tcacaatcagagtaagttgcatttttcacttattatcctagtttatgcacatgaaactgacaactagttatactactatgggttagaatgaatacatgca |
9828273 |
T |
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| Q |
101 |
ta----catacatacatagatcattgtatcttattaattttctgcaatttagacatgaaattattgtacacagtatttatgatatttactgatttttagt |
196 |
Q |
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| T |
9828274 |
tacatacatacatacatagatcattatatcttattaattttctgcaatttagacatgaaattattgtacacagtatttatgatatttattgatttttagt |
9828373 |
T |
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| Q |
197 |
gtgttttggggaacttagtaaattctaggacttctgaatggtgttttggaaattaaaagaaatgtgaggttaatatacatgagcctatgcatgtgtactt |
296 |
Q |
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| T |
9828374 |
gtgttttggggaacttagtaaattctaggacttctgaatggtgttttggaaa--aaaagaaatgtgaggttaatatacatgagcctatgcatgtgtactt |
9828471 |
T |
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| Q |
297 |
agatgtgta |
305 |
Q |
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||||||||| |
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| T |
9828472 |
agatgtgta |
9828480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 34037685 - 34037588
Alignment:
| Q |
108 |
atacatagatcattgtatcttattaattttctgcaatttagacatgaaattattg--tacacagtatttatgatatttactgatttttagtgtgtttt |
203 |
Q |
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| T |
34037685 |
atacatatatcattgcgtcttattaattttctgcaatttagacatgaaattattgtatatacagtatttatgatatttaccaatttttagtgtgtttt |
34037588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 9828929 - 9828866
Alignment:
| Q |
27 |
cacttattatcctagtttatgcacatgaaactgacaactagttatactactatgggttagaatg |
90 |
Q |
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| T |
9828929 |
cacttattatcatagtttatgcacatagaactcacaacatgctctactactatgggttagaatg |
9828866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 108 - 300
Target Start/End: Original strand, 38225444 - 38225641
Alignment:
| Q |
108 |
atacatagatcattgtatcttattaattttctgcaatttagacatgaaattattgtacacagtatttatgatatttactgatttttagtgtgttttgggg |
207 |
Q |
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||||||| |||||| |||||||||||||| | ||||||||||||||| |||| || ||||||||||||||||||||| |||||||||||||||| || |
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| T |
38225444 |
atacatatatcattacatcttattaattttatttaatttagacatgaaactattatatacagtatttatgatatttactaatttttagtgtgtttt-tgg |
38225542 |
T |
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| Q |
208 |
aactta---gtaaattctaggacttctgaatggtgttttggaaatta---aaagaaatgtgaggttaatatacatgagcctatgcatgtgtacttagat |
300 |
Q |
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| T |
38225543 |
aactcaagtgtaaattctaggatttcataatggtgtttcggaaaagaaagaaaaaaatgtgaggttaatttacatgagcctaggcatgtatatttagat |
38225641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38225357 - 38225414
Alignment:
| Q |
1 |
tcacaatcagagtaagttgcagttttcacttattatcctagtttatgcacatgaaact |
58 |
Q |
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| T |
38225357 |
tcacaatcagaataagttgtattttctacttattatcctagtttatgcacatgaaact |
38225414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 38231917 - 38231974
Alignment:
| Q |
32 |
attatcctagtttatgcacatgaaactgacaactagttatactactatgggttagaat |
89 |
Q |
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| T |
38231917 |
attatcctagtgtatgcacataaaactcacaacctgctctactactatgggttagaat |
38231974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 35891801 - 35891761
Alignment:
| Q |
24 |
tttcacttattatcctagtttatgcacatgaaactgacaac |
64 |
Q |
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| T |
35891801 |
tttcacttattatcctggtttatgcacataaaactcacaac |
35891761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 10457785 - 10457698
Alignment:
| Q |
116 |
atcattgtatcttattaattttctgcaatttagacatgaaattattgtacacagtatttatgatatttactgatttttagtgtgtttt |
203 |
Q |
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||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||| | ||||||| || ||||||||||||||| |
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| T |
10457785 |
atcattgcatcttattaattttctgtaatttagatatgaaattattgtatgcagtattttttatatttaatgctttttagtgtgtttt |
10457698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 10457878 - 10457790
Alignment:
| Q |
1 |
tcacaatcagagtaagttgcagttttcacttattatcctagtttatgcacatgaaactgacaactagttatactactatgggttagaat |
89 |
Q |
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||||||||||| |||||| || |||||| ||||||||||||||||||||||| |||| ||||| | | |||||||||| |||||||| |
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| T |
10457878 |
tcacaatcagaataagttacatttttcatttattatcctagtttatgcacatagaactcacaacctgctctactactatgagttagaat |
10457790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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