View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_low_19 (Length: 317)
Name: NF7413_low_19
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 43306639 - 43306518
Alignment:
| Q |
179 |
caagttgttgtctttagattcaaaatttagtaactttaatcaaatctgctttgtgggttttagtggttctttgttcagctcctgagaaagttgaagatcg |
278 |
Q |
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| T |
43306639 |
caagttgttgtctttagattcaaaatttagtaactttaatcaaatctgctttgtgggttttagtggttctttgttcagctcctgagaaagttgaagatcg |
43306540 |
T |
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| Q |
279 |
caaaacactaagaggaaagaag |
300 |
Q |
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| T |
43306539 |
caaaacactaagaggaaagaag |
43306518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 43307601 - 43307523
Alignment:
| Q |
36 |
caaactgttgaccataaacaactaaatacagtgtgatgtggggtcacaacaaacaaataaatcaataacttcattttcc |
114 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43307601 |
caaactattgaccataaacaactaaatacggtgtgatgtggggtcacaacaaacaaataaatcaataacttcattttcc |
43307523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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