View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_low_20 (Length: 310)
Name: NF7413_low_20
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 3961857 - 3962129
Alignment:
| Q |
18 |
atattcttctttttggagcttcttaagtataatgttttgtattttattgtctcttggttatttctaacattgtaggctatggtggaataagttaattcag |
117 |
Q |
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| T |
3961857 |
atattcttctttttggagcttcttaagtataatattttgtattttattgtctcttggttatttctaacattgtaggctatagtggaataagttaattcag |
3961956 |
T |
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| Q |
118 |
ttaatattccacaaatgagtatggtgcatggttttgtattgcggaggtatgtaaccgcagctgttggttcaattcggaaatttggaagattttcatgttg |
217 |
Q |
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| T |
3961957 |
ttaatattccacaaatgagtatggtgcatggttttgtattgcggcggtatgtaacagcagcagttggttcaattacgaagtttagaagatcttcatgttg |
3962056 |
T |
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| Q |
218 |
gaatgaaacactatattcaagtgagtaatatattaaatatgcactctaagttttgtcttgactcattctgagaagg |
293 |
Q |
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| T |
3962057 |
gaatgaaacactatattcaagtaagtaacacattgaatgtgca---aaagttttttcttgactcgttgtgagaagg |
3962129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 3806474 - 3806289
Alignment:
| Q |
28 |
ttttggagcttcttaagtataatgttttgtattttattgtctcttggttatttctaacattgtaggctatggtggaataagttaat-tcagttaatattc |
126 |
Q |
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| T |
3806474 |
ttttggagcttcttgaatatattattttgtatttttcagtctcttggttatttctaacattgcagcc-atagtggaaaaggtcaatatcagttaatattc |
3806376 |
T |
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| Q |
127 |
cacaaatga-gtatggtgcatggttttgtattgcggaggtatgtaaccgcagctgttggttcaattcggaaatttggaagattttca |
212 |
Q |
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| T |
3806375 |
ctcgaataaagtatgatgcatggttttgcattgccgcggtatgcaaccgtaacggttggttccattcagaagtttggaagattttca |
3806289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 3813117 - 3812923
Alignment:
| Q |
28 |
ttttggagcttcttaagtataatgttttgtattttattgtctcttggttatttctaacattgtaggctatggtggaataagttaat-tcagttaatattc |
126 |
Q |
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| T |
3813117 |
ttttggagcttcttgaatatattattttgtattattcagtctcttggttatttctaacattgca-gccatagtggaaaaggtcaatatcagttaatattc |
3813019 |
T |
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| Q |
127 |
cacaaat-gagtatggtgcatggttttgtattgcggaggtatgtaaccgcagctgttggttcaattcggaaatttggaagattttcatgttggaat |
221 |
Q |
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| T |
3813018 |
ctcgaataaagtatgatgcatggttttgcattgatacggtatgtaaccgtaacggttggttccattcagaagtttggaagattttcaagttagaat |
3812923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 4020155 - 4020003
Alignment:
| Q |
71 |
ttggttatttctaacattgtaggctatggtggaataagttaat-tcagttaatattccacaaatga-gtatggtgcatggttttgtattgcggaggtatg |
168 |
Q |
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| T |
4020155 |
ttggctatttctaaaatcgcaggccatagtggaaaaagtcaatatccgttaatattcctcaaataaagtatgatgcatggttttgtgttgcggcggtatg |
4020056 |
T |
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| Q |
169 |
taaccgcagctgttggttcaattcggaaatttggaagattttcatgttggaat |
221 |
Q |
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| T |
4020055 |
taactgcaacggttgattccattctgaagattggaagattttcttgtaggaat |
4020003 |
T |
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