View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_low_23 (Length: 282)
Name: NF7413_low_23
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 42933275 - 42933543
Alignment:
| Q |
1 |
tatcaacgtaggaagtgtggtacatcctgcattctcgcaccatattttcctcacgatcgtcaaaaacaattcttaaacgctcataaattgtttggtgttg |
100 |
Q |
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| T |
42933275 |
tatcaacgtaggaagtgtggtacatcctgcattctcgcaccatattttcctcacgatcgtcaaaaacaattcttaaacgctcataaattgtttggtgttg |
42933374 |
T |
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| Q |
101 |
gtaaaatcaccaacatgatcaagaatgttccacctcatcttagagatcatactatgagttctattatttttcaatctgatatgcgtgctatggatcctgt |
200 |
Q |
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| T |
42933375 |
gtaaaatcaccaatatgatcaagaatgttccacctcatcttagagatcataccatgagttctattatttttcaatctgatatgcgtgctatggatcctgt |
42933474 |
T |
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| Q |
201 |
tggtggttgttatagattcattcaacagcttcaatctcaatatgaattttatcaagctgagcttcatct |
269 |
Q |
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| T |
42933475 |
tggtggttgttatagattcattcaacagcttcaatctcaatatgaattttatcaagctgagcttcatct |
42933543 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 5747366 - 5747292
Alignment:
| Q |
166 |
atttttcaatctgatatgcgtgctatggatcctgttggtggttgttatagattcattcaacagcttcaatctcaa |
240 |
Q |
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| T |
5747366 |
atttttcaatctgatatgcgggctaatgatcctgttggtggttgttataaatatattcaagatcttcaagctcaa |
5747292 |
T |
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