View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_low_24 (Length: 270)
Name: NF7413_low_24
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_low_24 |
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| [»] scaffold0339 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 219
Target Start/End: Original strand, 47289800 - 47290009
Alignment:
| Q |
10 |
aagaatatacttttaatgcagtggtagtataataaaaaagttttaaacttaggatccagagctgttgtcatgcaagtgtagtaatgagacaccaatacaa |
109 |
Q |
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| T |
47289800 |
aagaatatacttttaatgcagtggtagtataataaaaaagttttaaacttcggatccagagctgttgtcatgcaagtgtagtaatgagacaccaatacaa |
47289899 |
T |
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| Q |
110 |
aatgagatgatactaaaatttattgcagtaatagattgtattgcattaaaactaaacttatacaatatctagaatgttggtttttaaaatagcaggggga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47289900 |
aatgagatgatactaaaatttattgcagtaatagatagtattgcattaaaactaaacttatacaatatctagaatgttggtttttaaaatagcaggggga |
47289999 |
T |
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| Q |
210 |
tcaaaacttc |
219 |
Q |
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|||||||||| |
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| T |
47290000 |
tcaaaacttc |
47290009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 47296556 - 47296727
Alignment:
| Q |
10 |
aagaatatacttttaatgcagtggtagtataataaaaaagttttaaacttaggatccagagctgttgtcatgcaagtgtagtaatgagacaccaatacaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47296556 |
aagaatatacttttaatgcagtggtagtataataaaaaagttttaaacttaggatccagagctgttgtcatgcaagtgtagtgatgagacaccaatacaa |
47296655 |
T |
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| Q |
110 |
aatgagatgatactaaaatttattgcagtaatagattgtattgcattaaaactaaacttatacaatatctag |
181 |
Q |
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| T |
47296656 |
aatgagatgatactaaaatttattgcagtaatagatagtattgcattaaaactaaacctatacaatatctag |
47296727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 47273803 - 47273849
Alignment:
| Q |
116 |
atgatactaaaatttattgcagtaatagattgtattgcattaaaactaaac |
166 |
Q |
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| T |
47273803 |
atgatactaaaatttattgcagtaata----gtattgcattaaaattaaac |
47273849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 3028 - 3074
Alignment:
| Q |
116 |
atgatactaaaatttattgcagtaatagattgtattgcattaaaactaaac |
166 |
Q |
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| T |
3028 |
atgatactaaaatttattgcagtaata----gtattgcattaaaattaaac |
3074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 15525 - 15481
Alignment:
| Q |
46 |
aaagttttaaacttaggatccagagctgttgtcatgcaagtgtag |
90 |
Q |
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| T |
15525 |
aaagttttaaacttagcatccagagttgttgtcatcaaagtgtag |
15481 |
T |
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