View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7413_low_27 (Length: 244)
Name: NF7413_low_27
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 45159934 - 45160149
Alignment:
| Q |
11 |
aaaaaatacattcttctttccattatttacgcttacattttcttgtttgcagctagcatacctttgtatttgtatcccttccttaaaacaaaagacaagt |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45159934 |
aaaaaatacattcgtctttccattatttacacttacattttcttgtttgcagctagcatacctttgtatttgtatcccttccttaaaacaaaagacaagt |
45160033 |
T |
|
| Q |
111 |
catcgcagtttgagtatttaaggcttgcaagtctcggagtcattggtgccttggtgaaggtattacgtgaaaagaaagtaattttaattacaaaaaatat |
210 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45160034 |
caccgcagtttgagtatttaaggcttgcaagtctcggagtcattggtgccttggtgaaggtattacgtgaaaagaaagtaattttaattacaaaaaatat |
45160133 |
T |
|
| Q |
211 |
tgtcacaaaaaactta |
226 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45160134 |
tgtcacaaaaaactta |
45160149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 226
Target Start/End: Complemental strand, 24128476 - 24128281
Alignment:
| Q |
31 |
cattatttacgcttacattttcttgtttgcagctagcatacctttgtatttgtatcccttccttaaaacaaaagacaagtcatcgcagtttgagtattta |
130 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||| |
|
|
| T |
24128476 |
cattatttaaacttacattttcttgtttgcagctagcatgcctttgtatttgtatcccttccttaaaacaaaagaaaagtcaccacagtttgagtattta |
24128377 |
T |
|
| Q |
131 |
aggcttgcaagtctcggagtcattggtgccttggtgaaggtattacgtgaaaagaaagtaattttaattacaaaaaatattgtcacaaaaaactta |
226 |
Q |
| |
|
||| |||||||||| |||||||||||||| || ||||||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24128376 |
aggtttgcaagtcttggagtcattggtgctttagtgaaggtattacatgaaaataaagtcattttaattacaaaaaatatcgtcacaaaaaactta |
24128281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 9518240 - 9518360
Alignment:
| Q |
56 |
tttgcagctagcatacctttgtatttgtatcccttccttaaaacaaaagacaagtcatcgcagtttgagtatttaaggcttgcaagtctcggagtcattg |
155 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||| |||||| |||||| | | ||| | | || |||||| ||||||| ||||| ||||| |||||||| | |
|
|
| T |
9518240 |
tttgcagctagcatgcctttatatttttatccattccttcaaacaacaagcgagttagcccaatttgagcatttaagacttgctagtcttggagtcatcg |
9518339 |
T |
|
| Q |
156 |
gtgccttggtgaaggtattac |
176 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
9518340 |
gtgcgttggtgaaggtattac |
9518360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 40806501 - 40806456
Alignment:
| Q |
131 |
aggcttgcaagtctcggagtcattggtgccttggtgaaggtattac |
176 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
40806501 |
aggcttggtagtcttggagtcattggtgctttggtgaaggtattac |
40806456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University