View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_low_3 (Length: 496)
Name: NF7413_low_3
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 266
Target Start/End: Complemental strand, 13829783 - 13829534
Alignment:
| Q |
23 |
cagtatcctggacgattgataccatcatcaatgatgtctatggaggaagattccgagtaatctgaatgatcagagcgaggagagtccgttgtttctagct |
122 |
Q |
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| T |
13829783 |
cagtatcctggacgattgataccatcatcaatgatgtctatggaggaagattccgagtactctgaatgatcagagcgaggagagtccgttgtttctagct |
13829684 |
T |
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| Q |
123 |
cgatggaaacagtggaggaggagtgtgatgggttttgatcacagtctcccttagtcattgttaatcgatcggaaagaaggtttaggtttag------gtt |
216 |
Q |
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| T |
13829683 |
tgatggaaacagtggaggaggagtgtgatgggtttttatcacagtctcccttagtcattgttaatcgacctgaaagaaggtttaggtttaggtttaggtt |
13829584 |
T |
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| Q |
217 |
tgtgtgagtggtatagagagaaagagtacaatgaaaaacaagtttgttgc |
266 |
Q |
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| T |
13829583 |
tgtgtgagtggtatagagagaaagagtacaatgaaaaacaagtttgttgc |
13829534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 294 - 482
Target Start/End: Complemental strand, 13829512 - 13829324
Alignment:
| Q |
294 |
gcagctgaatatattcttacgtatattttgcctaatttccaaaagagacttacgtagatttcgcatcctagcacgtaaattgtagtattagaagaaagta |
393 |
Q |
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| T |
13829512 |
gcagctgaatatattcttacgtatattttgcctaatttccaaaagagacttacgtagatttcgcatcctagcacgtaaattgtagtattagaagaaagta |
13829413 |
T |
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| Q |
394 |
tatatttaagcgtgtattatttttatgccattattgaaatttggattttaaataagaaagatttgattttgtgataactgattacaagt |
482 |
Q |
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| T |
13829412 |
tatatttaagcgtgtattatttttatgccattattgaaatttggattttaaataagaaagttttgattttgtgattactgattacaagt |
13829324 |
T |
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