View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7413_low_30 (Length: 235)

Name: NF7413_low_30
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7413_low_30
NF7413_low_30
[»] chr8 (2 HSPs)
chr8 (14-235)||(11484469-11484690)
chr8 (19-169)||(44958110-44958260)
[»] chr3 (30 HSPs)
chr3 (14-235)||(10031443-10031664)
chr3 (14-235)||(10126368-10126589)
chr3 (14-235)||(10183679-10183900)
chr3 (14-235)||(10260138-10260359)
chr3 (14-235)||(10662966-10663187)
chr3 (19-184)||(10376246-10376411)
chr3 (19-184)||(10580104-10580269)
chr3 (19-152)||(9838396-9838529)
chr3 (19-152)||(9849274-9849407)
chr3 (25-115)||(8860858-8860948)
chr3 (14-187)||(13289165-13289338)
chr3 (19-184)||(10434445-10434610)
chr3 (14-115)||(13332476-13332577)
chr3 (14-115)||(13343661-13343762)
chr3 (29-184)||(10364209-10364364)
chr3 (19-152)||(10076801-10076934)
chr3 (19-115)||(10088362-10088458)
chr3 (19-115)||(11149255-11149351)
chr3 (61-115)||(10517060-10517114)
chr3 (25-115)||(10526931-10527021)
chr3 (61-115)||(10541546-10541600)
chr3 (61-115)||(11782422-11782476)
chr3 (14-115)||(11768806-11768907)
chr3 (14-115)||(13160552-13160653)
chr3 (19-115)||(10195245-10195341)
chr3 (19-115)||(10888878-10888974)
chr3 (19-115)||(11160418-11160514)
chr3 (60-115)||(10500149-10500204)
chr3 (61-115)||(13170603-13170657)
chr3 (19-95)||(11131427-11131503)
[»] chr6 (1 HSPs)
chr6 (58-115)||(31680179-31680236)
[»] scaffold0083 (1 HSPs)
scaffold0083 (19-115)||(50206-50302)
[»] chr2 (1 HSPs)
chr2 (19-115)||(26906469-26906565)
[»] scaffold0002 (2 HSPs)
scaffold0002 (14-115)||(146335-146436)
scaffold0002 (61-115)||(136331-136385)
[»] chr4 (1 HSPs)
chr4 (19-115)||(17853321-17853417)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 11484690 - 11484469
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11484690 gtttcttctctaccttgcatcgcaaggcatcatagctgatttcattaagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 11484591  T
Q  114 gattttgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgtttccatttcttccatcaaagattcattcaac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11484590 gattttgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgtttccatttcttccatcaatgattcattcaac 11484491  T
Q  214 ttggtttttgtgatataatcac 235  Q
    ||||||||||||||||||||||    
T  11484490 ttggtttttgtgatataatcac 11484469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 44958110 - 44958260
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga-tt 117  Q
    ||||| || ||||| |||| || ||| ||||| ||||  |||||||||||||| |||||||| |||| || ||||||   |||||||||||||||||       
T  44958110 ttctccactttgcaacgcagggaatcatagctaatttggttgagcaaatcctcggcatcaaatattgtatttttcaagtcatcaagccattgtttgacag 44958209  T
Q  118 ttgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagag 169  Q
    |  |||||   ||| |||||||| |||||||||||||||||||||| |||||    
T  44958210 taaggttg-gtgatttgcttctcctctgcatcatcaagcacaacctgaagag 44958260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 10031664 - 10031443
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    |||||||||| | ||||||||| | ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| | |||||||||    
T  10031664 gtttcttctccagcttgcatcgtatggcattgtagctgatttgattgagcaaatcctcagcatcatagattgcatcttttaaccgatccaaccattgttt 10031565  T
Q  114 gattttgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgtttccatttcttccatcaaagattcattcaac 213  Q
    |||| ||||||  |||||||||||||| ||||||||||| || ||||||||||||| ||||||  |||||||||| || |||||||| ||||||||||||    
T  10031564 gattctgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaagagtaagtagacttgtttccatctcatccatcaatgattcattcaac 10031465  T
Q  214 ttggtttttgtgatataatcac 235  Q
    || |||||||| ||||||||||    
T  10031464 tttgtttttgttatataatcac 10031443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 10126589 - 10126368
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    |||||||||| | ||||||||| | ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||    
T  10126589 gtttcttctccagcttgcatcgtagggcattgtagctgatttgattgagcaaatcctcagcatcatagattgcatcttttaaccgatccagccattgttt 10126490  T
Q  114 gattttgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgtttccatttcttccatcaaagattcattcaac 213  Q
    |||| ||||||  |||||||||||||| ||||||||||| || ||||||||||||| ||||||  |||||||||| || | |||||| ||||||||||||    
T  10126489 gattctgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaagagtaagtagacttgtttccatctcatacatcaatgattcattcaac 10126390  T
Q  214 ttggtttttgtgatataatcac 235  Q
    |  ||| |||||| ||||||||    
T  10126389 tctgttcttgtgaaataatcac 10126368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 10183900 - 10183679
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    |||||||||| | ||||||||| | ||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||| |||||||| | |||||||||    
T  10183900 gtttcttctccatcttgcatcgtagggcattgtagctgatttgattgaacaaatcctcagcatcatagattgcatcttttaaccgatccaaccattgttt 10183801  T
Q  114 gattttgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgtttccatttcttccatcaaagattcattcaac 213  Q
    |||| ||||||  |||||||||||||| ||||||||||| || ||||||||||||| ||||||  |||||||||| || || ||||| ||||||||||||    
T  10183800 gattctgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaagagtaagtagacttgtttccatctcatctatcaatgattcattcaac 10183701  T
Q  214 ttggtttttgtgatataatcac 235  Q
    |  |||||||||||||||||||    
T  10183700 tctgtttttgtgatataatcac 10183679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 10260359 - 10260138
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    |||||||||| | ||||||||| | ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| | |||||||||    
T  10260359 gtttcttctccagcttgcatcgtagggcattgtagctgattttattgagcaaatcctcagcatcatagattgcatcttttaaccgatccaaccattgttt 10260260  T
Q  114 gattttgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgtttccatttcttccatcaaagattcattcaac 213  Q
    |||| ||||||  |||||||||||||| ||||||||||| || ||||||||||||| ||||||  |||||||||| || | |||||| ||||||||||||    
T  10260259 gattctgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaagagtaagtagacttgtttccatctcatacatcaatgattcattcaac 10260160  T
Q  214 ttggtttttgtgatataatcac 235  Q
    |  ||| |||||| ||||||||    
T  10260159 tctgttcttgtgaaataatcac 10260138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 10663187 - 10662966
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    |||||||||| | ||||||||| | ||||| ||||||||||| |||||| |||||||| |||||| ||||||||||||| |||||||| | |||||||||    
T  10663187 gtttcttctccagcttgcatcgtagggcattgtagctgatttgattgagtaaatcctctgcatcatagattgcatcttttaaccgatccaaccattgttt 10663088  T
Q  114 gattttgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgtttccatttcttccatcaaagattcattcaac 213  Q
    |||| ||||||  |||||||||||||| ||||||||||| || ||||||||||||| ||||||  |||||||||| || | |||||| ||||||||||||    
T  10663087 gattctgggtttgaggatctgcttctcctctgcatcatctagtacaacctcaagagtaagtagacttgtttccatctcatacatcaatgattcattcaac 10662988  T
Q  214 ttggtttttgtgatataatcac 235  Q
    |  ||| |||||| ||||||||    
T  10662987 tctgttcttgtgaaataatcac 10662966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 10376246 - 10376411
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttgattt 118  Q
    ||||| ||||||||||||| || ||| || ||||||||||||||||| ||||||||||||||||| |||||||||||   |||||||||||| ||||       
T  10376246 ttctccaccttgcatcgcagggaatcataactgatttcattgagcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacag 10376345  T
Q  119 tgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgttt 184  Q
      || |  | |||||||||||| ||||||||||| |||||||| | |||||  || ||||||||||    
T  10376346 aaggattgatgatctgcttctcctctgcatcatccagcacaacttgaagagtgagcagtgttgttt 10376411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 10580269 - 10580104
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttgattt 118  Q
    ||||| ||||||||||||| || |||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||   |||||||||| ||||||       
T  10580269 ttctccaccttgcatcgcagggaatcgtaactgatttcattgagcaagtcctcagcatcaatgatagcatctttcaagtcatcaagccatagtttgacag 10580170  T
Q  119 tgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgttt 184  Q
      || | |  |||||||||||| ||||||||||| |||||||| | |||||  || ||||||||||    
T  10580169 caggattattgatctgcttctcctctgcatcatccagcacaacttgaagagtgagcagtgttgttt 10580104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 9838529 - 9838396
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttgattt 118  Q
    ||||| ||||||||||||| || |||||| |||||||| |||||||||||||||||||||||||   ||||||||||   ||||||||| |||||||  |    
T  9838529 ttctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacat 9838430  T
Q  119 tgggttgaaggatctgcttctcttctgcatcatc 152  Q
     ||| |    |||||||||||| |||||||||||    
T  9838429 ggggattgctgatctgcttctcctctgcatcatc 9838396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 9849407 - 9849274
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttgattt 118  Q
    ||||| ||||||||||||| || |||||| |||||||| |||||||||||||||||||||||||   ||||||||||   ||||||||| |||||||  |    
T  9849407 ttctccaccttgcatcgcagggaatcgtaactgatttcgttgagcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgacat 9849308  T
Q  119 tgggttgaaggatctgcttctcttctgcatcatc 152  Q
     ||| |    |||||||||||| |||||||||||    
T  9849307 ggggattgctgatctgcttctcctctgcatcatc 9849274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 8860948 - 8860858
Alignment:
Q  25 accttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    ||||||||||| || | ||| || |||||||  |||||||||||||||||||||||||  |||||||||||   |||||||||||||||||    
T  8860948 accttgcatcgtaatgaatcataactgatttggttgagcaaatcctcagcatcaaagagagcatctttcaagtcatcaagccattgtttga 8860858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 13289338 - 13289165
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    |||||||||| ||||| ||||||| ||  |||||  ||||||  || |||||||||||||||||| ||||||||||||||| | |||| | |||||||||    
T  13289338 gtttcttctccaccttacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcagctgatccaaccattgttt 13289239  T
Q  114 ga-ttttgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgtttcca 187  Q
    ||     | ||||   ||| ||||||  |||||||||||| ||||| |||| |||||| ||||||||||||||||    
T  13289238 gacagcagtgttg-gtgatttgcttcagttctgcatcatccagcaccacctgaagagcgagtagtgttgtttcca 13289165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 10434445 - 10434610
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttgattt 118  Q
    ||||| |||||| |||| | || ||| || |||||||| |||||||| ||||| ||||||||||  |||||||||||   |||||||||||||||||       
T  10434445 ttctccaccttggatcgaagggaatcataactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagtcatcaagccattgtttgacag 10434544  T
Q  119 tgggttgaaggatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgttt 184  Q
      ||||    |||||||||||| ||||||||||| |||||||| | |||||  || ||||||||||    
T  10434545 caggtttgttgatctgcttctcctctgcatcatccagcacaacttgaagagtgagaagtgttgttt 10434610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 13332577 - 13332476
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    |||||||||| ||||| ||||||| ||  |||||  ||||||  || |||||||||||||||||| ||||||||||||||| | |||| | |||||||||    
T  13332577 gtttcttctccaccttacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcagctgatccaaccattgttt 13332478  T
Q  114 ga 115  Q
    ||    
T  13332477 ga 13332476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 13343762 - 13343661
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    |||||||||| ||| | ||||||| ||  |||||| ||||||  || |||||||||||||||||| ||||||||||||||| | |||| | |||||||||    
T  13343762 gtttcttctccaccgtacatcgcagggagtcgtagttgatttggttaagcaaatcctcagcatcatagattgcatctttcagctgatccaaccattgttt 13343663  T
Q  114 ga 115  Q
    ||    
T  13343662 ga 13343661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 10364209 - 10364364
Alignment:
Q  29 tgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttgattttgggttgaag 128  Q
    ||||||||| || ||| || |||||||| |  ||||||||||| ||||||||||  ||||||||||| | |||||||||||||||||     || |        
T  10364209 tgcatcgcagggaatcataactgatttcgtgaagcaaatcctcggcatcaaagacagcatctttcaagccatcaagccattgtttgacagcaggattgtt 10364308  T
Q  129 gatctgcttctcttctgcatcatcaagcacaacctcaagagcaagtagtgttgttt 184  Q
    |||||||||||||||||| ||||| |||||||| | |||||  || ||||||||||    
T  10364309 gatctgcttctcttctgcgtcatccagcacaacttgaagagtgagcagtgttgttt 10364364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 10076934 - 10076801
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttgattt 118  Q
    ||||| |||||||||||||  | |||||| |||||||| |||||||| ||||| ||||||||||  |||||||||||   ||||||||| ||| |||  |    
T  10076934 ttctccaccttgcatcgcagtgaatcgtaactgatttcgttgagcaagtcctcggcatcaaagacagcatctttcaagttatcaagccactgtctgacat 10076835  T
Q  119 tgggttgaaggatctgcttctcttctgcatcatc 152  Q
     ||| |    |||||||||||| |||||||||||    
T  10076834 ggggattgctgatctgcttctcctctgcatcatc 10076801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 10088458 - 10088362
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    ||||| ||||||||||| | || ||| || ||||||||  ||||||| ||||||||||||||||  |||||||||||   |||||||||| ||||||    
T  10088458 ttctccaccttgcatcgaagggaatcataactgatttcgctgagcaagtcctcagcatcaaagacagcatctttcaagtcatcaagccatagtttga 10088362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 11149255 - 11149351
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    ||||| |||||||||||||  |  || || || |||| ||| ||||||||||| ||||||||||| |||||||||||   |||||||||||||||||    
T  11149255 ttctccaccttgcatcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaagatagcatctttcaagtcatcaagccattgtttga 11149351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 10517114 - 10517060
Alignment:
Q  61 agcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    |||||||| |||| |||||||||||||||||||||   |||||||||||||||||    
T  10517114 agcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttga 10517060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 10527021 - 10526931
Alignment:
Q  25 accttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    |||||||| ||||  |||||||||||||||   |  |||||||| ||||||||||| ||||||||||||||   || ||||||||||||||    
T  10527021 accttgcaccgcagagcatcgtagctgattaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatgaagccattgtttga 10526931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 10541600 - 10541546
Alignment:
Q  61 agcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    |||||||| ||||||||||||||||||||||||||   |||||||||||| ||||    
T  10541600 agcaaatcttcagcatcaaagattgcatctttcaagtcatcaagccattgcttga 10541546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 11782422 - 11782476
Alignment:
Q  61 agcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    |||||||| ||||||||||| ||||||||||||||   |||||||||||||||||    
T  11782422 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttga 11782476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 11768907 - 11768806
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    |||||||||| | ||||||||| | ||  || || || |||| || ||| |||||||||||||||||||| || ||||||||   |||||||||||||||    
T  11768907 gtttcttctccatcttgcatcggagggagtcataacttatttgatcgagtaaatcctcagcatcaaagatagcgtctttcaagtcatcaagccattgttt 11768808  T
Q  114 ga 115  Q
    ||    
T  11768807 ga 11768806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 13160653 - 13160552
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    |||||||||| ||| | ||||||| ||  |||||  ||||||  || |||||||||||||||||| |||||||||||||||   |||| | |||||||||    
T  13160653 gtttcttctccaccgtacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcagttgatccatccattgttt 13160554  T
Q  114 ga 115  Q
    ||    
T  13160553 ga 13160552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 10195341 - 10195245
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    ||||| ||||||||||| | || ||| || ||||||||  ||| ||| ||||||||||||||||  |||||||||||   |||||||||| ||||||    
T  10195341 ttctccaccttgcatcgaagggaatcataactgatttcgctgaacaagtcctcagcatcaaagacagcatctttcaagtcatcaagccatagtttga 10195245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 10888974 - 10888878
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    ||||| |||||||||||||| |  || || || ||||  || ||||||||||| ||||||||||  |||||||||||   |||||||||||||||||    
T  10888974 ttctccaccttgcatcgcaatgattcataactaatttggttcagcaaatcctccgcatcaaagacagcatctttcaagtcatcaagccattgtttga 10888878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 11160418 - 11160514
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    ||||| |||||||||||||  |  || || || |||| ||| ||||||||||| ||||||||||  |||||||||||   |||||||||||||||||    
T  11160418 ttctccaccttgcatcgcagtgattcataactaatttgattcagcaaatcctcggcatcaaagacagcatctttcaagtcatcaagccattgtttga 11160514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 10500204 - 10500149
Alignment:
Q  60 gagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    ||||||||| ||||||||||||||||  ||||||||   |||||||||||||||||    
T  10500204 gagcaaatcttcagcatcaaagattgtgtctttcaagtcatcaagccattgtttga 10500149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 13170657 - 13170603
Alignment:
Q  61 agcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    |||||||||||||||||| |||||||||||||||   |||| | |||||||||||    
T  13170657 agcaaatcctcagcatcatagattgcatctttcagttgatccatccattgtttga 13170603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 11131427 - 11131503
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaa 95  Q
    ||||| |||||||||||||  |  || || || |||| ||| ||||||||||| ||||||||||| |||||||||||    
T  11131427 ttctccaccttgcatcgcagtgactcataactaatttgattcagcaaatcctccgcatcaaagatagcatctttcaa 11131503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 31680179 - 31680236
Alignment:
Q  58 ttgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    ||||||||||||||||||||| | |||||||||||||||  |||||||||||||||||    
T  31680179 ttgagcaaatcctcagcatcatatattgcatctttcaactcatcaagccattgtttga 31680236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 50206 - 50302
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    ||||| ||||||||||||| || ||| || ||||||||  ||||||| ||||||||||||||||  |||||||||||   |||||||||| ||||||    
T  50206 ttctccaccttgcatcgcagggaatcataactgatttcgctgagcaagtcctcagcatcaaagacagcatctttcaagtcatcaagccatagtttga 50302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 26906565 - 26906469
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    ||||| || |||||||||| || ||| || || ||||| |||||||| |||||| |||||||||| |||||||||||   |||||||||||||||||    
T  26906565 ttctcgactttgcatcgcagggaatcataactaatttcgttgagcaagtcctcaacatcaaagatagcatctttcaagtcatcaagccattgtttga 26906469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 146335 - 146436
Alignment:
Q  14 gtttcttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgttt 113  Q
    |||||||||| ||| | ||||||| ||  |||||  ||||||  || |||||||||||||||||| |||||||||||||||   |||| | |||||||||    
T  146335 gtttcttctccaccgtacatcgcagggagtcgtaattgatttggttaagcaaatcctcagcatcatagattgcatctttcagttgatccatccattgttt 146434  T
Q  114 ga 115  Q
    ||    
T  146435 ga 146436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 136331 - 136385
Alignment:
Q  61 agcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    |||||||||||||||||| |||||||||||||||   |||| | |||||||||||    
T  136331 agcaaatcctcagcatcatagattgcatctttcagttgatccatccattgtttga 136385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 17853321 - 17853417
Alignment:
Q  19 ttctctaccttgcatcgcaaggcatcgtagctgatttcattgagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 115  Q
    ||||| |||||||| | ||||||||||||| |||||  || ||||| ||| || |  |||||||| || ||||||||   |||||||||||||||||    
T  17853321 ttctccaccttgcacctcaaggcatcgtagttgattaaatcgagcagatcttccgtgtcaaagatagcgtctttcaaatcatcaagccattgtttga 17853417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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