View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7413_low_6 (Length: 472)
Name: NF7413_low_6
Description: NF7413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7413_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 21 - 457
Target Start/End: Original strand, 10268846 - 10269282
Alignment:
| Q |
21 |
aagcaatttccacggcaatatgtttaacaactggattaattggttttcgaaaaggagaaacaaaatcatcttgtatgtattctttttgcattcctatctt |
120 |
Q |
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| T |
10268846 |
aagcaatttccacggcaatatgtttaacaactggattaattggttttcgaaaaggagaaacaaaaccatcttgtatgtattctttttgcattcctatctt |
10268945 |
T |
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| Q |
121 |
gttttagtgcttaacattgtttgcctacatgtattcaattgcggttgcatacttgttcgtttcacattttattcctcctccttatattctattttggtta |
220 |
Q |
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| T |
10268946 |
gttttagtgcttaacattgtttgcctacatgtattcaattgcggttgcatacttgttcgtttcacattttattcctcctccttatattctattttggtta |
10269045 |
T |
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| Q |
221 |
ctatctctttttgaggttgttaaaggggttgagattatgatgccccatgttcgaattcggaatttcccataaaatttcatcatagtcaagataacaattt |
320 |
Q |
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| T |
10269046 |
ctatctctttttgaggttgttaaaggggttgagattatgatgccccatgttcgaattcggaatttcccataaaatttcatcacagtcaagataacaattt |
10269145 |
T |
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| Q |
321 |
atgtattttcctttttnnnnnnnttatgtgatttcttttgaagggaaaatttgcacttttgaaggaaaacttttaaaggcttaatttgcacttttgactt |
420 |
Q |
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| T |
10269146 |
atgtattttcctttttaaaaaaattatgtgatttcttttgaagggaaaatttgcacttttgaaggcaaacttttaaaggcttaatttgcacttttgactt |
10269245 |
T |
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| Q |
421 |
caaactttttcaattgtacgattttgatccttctaat |
457 |
Q |
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| T |
10269246 |
caaactttttcaattgtacgattttgatccttctaat |
10269282 |
T |
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