View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7414_low_1 (Length: 442)
Name: NF7414_low_1
Description: NF7414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7414_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 63 - 428
Target Start/End: Complemental strand, 11576981 - 11576614
Alignment:
| Q |
63 |
cacaccttgtgtttgagtggttttagccttttaattaatatatttcttttggcttcttataaaaagatatataattggttttaaaaataaatgtaagaat |
162 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11576981 |
cacaccttgtgcttgagtggttttagccttttaattaatatatttcttttggcttcttataaaaagatatataattggttttaaaaataaatgtgagaat |
11576882 |
T |
|
| Q |
163 |
gatgtaatttaattattgttataggggtgtaacnnnnnnnntgcttaactagcaaaaatcagcaaattaataggaacaacaaaaagaattaagttatagg |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11576881 |
gatgtaatttaattattgttataggggtgtaacaaaaaaaatgcttaactagcaaaaatcagcaaattaataggaacaacaaaaagaattaagttatagg |
11576782 |
T |
|
| Q |
263 |
ggagtaccatgtttatgtatatatatcgtaaaaaattgtcacaaatgcggtttatatccttgtacatgaaaagtatgacaagtgacatccgtaaat---- |
358 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11576781 |
ggagtactatgtttatgtat--atatcgtaaaaatttgtcacaaatgcggtttatatccttgtacatgaaaagtatgacaagtgacatccgtaaataata |
11576684 |
T |
|
| Q |
359 |
acaaaataagactagaattaattaataacagagtccaccactagaattagttaatggagcatgataaact |
428 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11576683 |
acaaaataagactagaattaattcataacagagtccaccactagaattagttaatggagcatgagaaact |
11576614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University