View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7415_high_12 (Length: 451)
Name: NF7415_high_12
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 37082897 - 37083316
Alignment:
| Q |
16 |
atagaacctcatttgttaagggaaaaagggtgtgactataactataagatgatgaatttggtggcacagaaaattggtggaggaattagaattgatagtg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37082897 |
atagaacctcatttgttaagggaaaaagggtgtgactataactataagatgatgaatttggtggcacagaaaattggtggaggaattagaattgatagtg |
37082996 |
T |
|
| Q |
116 |
cagtttctggatggaataagaaattgtttagtccattgaaaaagcatagctcaagcaatggaaaaaccatgattcttgaacttgaattgcaagaaacaga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37082997 |
cagtttctggatggaataagaaattgtttagtccattgaaaaagcatagctcaagcaatggaaaaaccatgattcttgaacttgaattgcaagaaacaga |
37083096 |
T |
|
| Q |
216 |
acatgtttcttcagaaattttggaaggaataactccacttcgtgataaaatgactcctctttctgatgatactagtccaccaccatcaagtcaccaattt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37083097 |
acatgtttcttcagaaattttggaaggaataactccacttcgtgataaaatgactcctctttctgatgatactagtccaccaccatcaagtcaccaattt |
37083196 |
T |
|
| Q |
316 |
agtgactcgtatttttcgatagatttgaataagtcttattcaacaaatcatgatcttagaagtcatatacgaaaagaagttaatagtgattacattaacc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37083197 |
agtgactcgtatttttcgatagatttgaataagtcttattcaacaaatcatgatcttagaagtcatatacgaaaagaagttaatagtgattacattaacc |
37083296 |
T |
|
| Q |
416 |
ggagtgttgtatcaagtaat |
435 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37083297 |
ggagtgttgtatcaagtaat |
37083316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 435
Target Start/End: Complemental strand, 11003095 - 11002681
Alignment:
| Q |
17 |
tagaacctcatttgttaagggaaaaagggtgtgactataactataagatgatgaatttggtggcacagaaaattggtggaggaattagaattgatagtgc |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11003095 |
tagaacctcatttgctaagggaaaaagggtgtgactataa------gacgatgaattcggcggcacagaaaattggtggaggaattataattgatagtgc |
11003002 |
T |
|
| Q |
117 |
agtttctggatggaataagaaattgtttagtccattgaaaaagcatagctcaagcaatggaaaaaccatgattcttgaacttgaattgcaagaaacagaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11003001 |
agtttctggatggaataagaaattgtttattccattgaaaaagcatagcacaagcaatggaaaaaccatgattcttgaacttgaattgcaagaaacagaa |
11002902 |
T |
|
| Q |
217 |
ca-----------------tgtttcttcagaaattttggaaggaataactccacttcgtgataaaatgactcctctttctgatgatactagtccaccacc |
299 |
Q |
| |
|
| ||||||| || ||||||||||||||| ||| | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
11002901 |
aatttagaagtactcattctgtttctacaaaaattttggaaggaaaaacacaacttcgtgataaaatggctcctctttctgatgata------------- |
11002815 |
T |
|
| Q |
300 |
atcaagtcaccaatttagtgactcgtatttttcgatagatttgaataagtcttattcaacaaatcatgatcttagaagtcatatacgaaaagaagttaat |
399 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||| |
|
|
| T |
11002814 |
--caagtcacgaatttagtgactcttatttttaaatagatttgaataagtcttattcaacaaatcatgattttagaagtcagatatgaaatgaagttaat |
11002717 |
T |
|
| Q |
400 |
agtgattacattaaccggagtgttgtatcaagtaat |
435 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| |
|
|
| T |
11002716 |
agtgattacaataaccggagtgttgcatcaagtaat |
11002681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University