View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_high_13 (Length: 438)
Name: NF7415_high_13
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 12633295 - 12633651
Alignment:
| Q |
20 |
tgtaattacagcgaggttggcaaaatcatggtcacacattgatttcgttagtttcaaaatataatttttgccaaaactacggtagcaaactatgactctg |
119 |
Q |
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| T |
12633295 |
tgtaattacagcgaggttggcaaaatcatggtcacacattgatttcgttagtttcaaaatataatttttgccaaaagtacggtagcaaactatgactctg |
12633394 |
T |
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| Q |
120 |
aaaactgactgtcggtccatacatgcccttctacgcataaaa-ctagtattcattactaaccttgttgatttggtaattacggaggcgagtgcagattct |
218 |
Q |
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| T |
12633395 |
aaaactgactgta--tccaaacatgtacttctaagcataaaaactagcattcactactaaccttgttgatttgttaattacggaggccggtgcagattct |
12633492 |
T |
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| Q |
219 |
gtttgtgacttcaagtagtttctggtactcagggttgagctgtacttctttcgaccaatatccagcggttaaatttatgatttgcacaagtaattcagct |
318 |
Q |
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| T |
12633493 |
attagtgacataaagtagtttctggtactcagggttgagttgtacttcttttgacaaatatccagcggttaaatttatgatttgcacaagtaattcagct |
12633592 |
T |
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| Q |
319 |
tctcttttggatctatttccttcatagtgccagcttgagaaccactttttccactgatc |
377 |
Q |
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| T |
12633593 |
tctcttttggatttgtttccttcatagtgccagcttgagaaccacctttgccactgatc |
12633651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 31150945 - 31151300
Alignment:
| Q |
20 |
tgtaattacagcgaggttggcaaaatcatggtcacacattgatttcgtta--gtttcaaaatataatttttgccaaaactacggtagcaaactatgactc |
117 |
Q |
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| T |
31150945 |
tgtaattacagcgagtttggcaaaatcatggtaacacattgattttgttaaagttccaaaatataattttggccaaatctacggtcgcaaactatgactc |
31151044 |
T |
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| Q |
118 |
tgaaaactgactgtcggtccatacatgcccttctacgcataaaactagtattcattactaaccttgttgatttggtaattacggaggcgagtgcagattc |
217 |
Q |
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| T |
31151045 |
tgaaaactgattgtcggtccaaacatgcacttctaagcataaaactagtattcattattaacctaat-gctttggaaattacggaggccagtgcagatta |
31151143 |
T |
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| Q |
218 |
tgtttgtgacttcaagtagtttctggtactcagggttgagctgtacttctttcgaccaatatccagcggttaaatttatgatttgcacaagtaattcagc |
317 |
Q |
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| T |
31151144 |
tgtttgtgacatcaagtagtttattgtactctggattgagatgtacatcttttgtccaatttcccgcggttaaatttatgatttccacaagtaattcagc |
31151243 |
T |
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| Q |
318 |
ttctcttttggatctatttccttcatagtgccagcttgagaaccactttttccactgat |
376 |
Q |
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| T |
31151244 |
ttctcttttggatttgtttccttcatcgtgcca--ttgagaaccacctttgccactgat |
31151300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 81 - 377
Target Start/End: Complemental strand, 37961285 - 37960988
Alignment:
| Q |
81 |
taatttttgccaaaactacggtagcaaactatgactctgaaaac-tgactgtcggtccatacatgcccttctacgcataaaactagtattcattactaac |
179 |
Q |
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|||||||| ||||||||||| |||||||| ||||||| | ||| | || || ||||| |||||| |||||| |||||||||| ||||||||||||||| |
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| T |
37961285 |
taatttttaccaaaactacgacagcaaactgtgactctaagaacctaaccgttagtccaaacatgcacttctaagcataaaactggtattcattactaac |
37961186 |
T |
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| Q |
180 |
cttgttgatttggtaattacggaggcgagtgcagattctgtttgtgacttcaagtagtttctggtactcagggttgagctgtacttctttcgaccaatat |
279 |
Q |
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| T |
37961185 |
cttgttgctttggtaattacggaggccagtgcagattccgtttgtgacttcaagtagtttctggtactcaggattgagctgtacttcttttgaccaatat |
37961086 |
T |
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| Q |
280 |
ccagcggttaaatttatgatttgcacaagtaattcagcttctcttttggatctatttccttcatagtgccagcttgagaaccactttttccactgatc |
377 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| | ||||||||| |||||| ||| ||||||||| |
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| T |
37961085 |
ccagcggttaaatttatgatttgcacaagtaatttagcttctcttttggatttgtttccttcattgacccagcttgaaaaccacctttgccactgatc |
37960988 |
T |
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