View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_high_15 (Length: 398)
Name: NF7415_high_15
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_high_15 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 11552 - 11181
Alignment:
| Q |
18 |
gagaaaatatctatgtccagaaacagaaggagtagcataagggcccgatatctcagcatgtaacaaatcaaaaatgctattagaatgagtaacactatta |
117 |
Q |
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| T |
11552 |
gagaaaatatctatgtccagaaacaaaaggagtagcataagggccccatatatcagcatgtaacaaatcaaaaatgttattagaatgagtaacactatta |
11453 |
T |
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| Q |
118 |
ggataacgaagaactctttgtttggaaaaatgacaaacatcacaaggagtatttttattaccattcttgtaagacataaaaggataagttgaagcaatac |
217 |
Q |
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| T |
11452 |
ggataaggaagaactctttgtttggaaaaatgacaaacatcacaaggagtatttttattatgattcttgtaagaaataaaaggataagttgaagcaatac |
11353 |
T |
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| Q |
218 |
atttgtgaatagcgtcagagatatgacctaatctacaatgccataaagaggcagaatccatgttattagaaacagaattacaagaaagcatgggagaaag |
317 |
Q |
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| T |
11352 |
atttgtgaatagcgtcagagatatgacctaatctacaatgccataaagaggcagaatccatgttattagaaacagaattacaagaaagcatgggagaaag |
11253 |
T |
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| Q |
318 |
taaaggaactgaggcatgggcttgtataacatacaaatctccatgtctctcagctgtaccaatcatattctt |
389 |
Q |
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| T |
11252 |
taaagaaactgaggcatgggcttgtatagcatacaaatctccatgtctctcagctgtaccaatcattttctt |
11181 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 22454726 - 22454768
Alignment:
| Q |
209 |
aagcaatacatttgtgaatagcgtcagagatatgacctaatct |
251 |
Q |
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| T |
22454726 |
aagcaatacatttgtgaatagcgtcagagatatgacctaatct |
22454768 |
T |
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