View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_high_18 (Length: 389)
Name: NF7415_high_18
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_high_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 119 - 389
Target Start/End: Complemental strand, 8520693 - 8520420
Alignment:
| Q |
119 |
gttgagccaaaactcatccctccatcgtgaatggccacataaacaaaatccaaacacctatcgtcatctacttacaacaaagacaatnnnnnnnncatca |
218 |
Q |
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| T |
8520693 |
gttgagcaaaaactcatccctccatcgtgaatggccacataaacaaaatccaaacacctatcgctttctacttacaccaaagacaataaaaaaaacatca |
8520594 |
T |
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| Q |
219 |
caccttctgaaccccaaacaaca---ccaccaccacaattgagccaaattcccacactcattcagatttcatcaccaatcaatatttggtctgttcaaag |
315 |
Q |
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| T |
8520593 |
caccttctgaaccccaaacaacaacaccaccaccacaattgagccaaattcccgcactcattcaaatttcatcaccaatcaatatttggtgtgttcaaag |
8520494 |
T |
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| Q |
316 |
gcaacaccagaacaaaccaaaaaactttagttaagaaacagacttctaatctcgaatcaaaagtgattggtcca |
389 |
Q |
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| T |
8520493 |
gcaacaccagaacaaaccaaaaaactttagtcaagaagcagacttctgatctcgaatcaaaagtgattggtcca |
8520420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 37831163 - 37831112
Alignment:
| Q |
247 |
accacaattgagccaaattcccacactcattcagatttcatcaccaatcaat |
298 |
Q |
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| T |
37831163 |
accacaactgagccaaatttcaacactcattcagattccaccaccaatcaat |
37831112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 28006752 - 28006700
Alignment:
| Q |
246 |
caccacaattgagccaaattcccacactcattcagatttcatcaccaatcaat |
298 |
Q |
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| T |
28006752 |
caccacaattgagccaaattcccacactcattcggattccaccaccaatcaat |
28006700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Complemental strand, 28006895 - 28006861
Alignment:
| Q |
146 |
tgaatggccacataaacaaaatccaaacacctatc |
180 |
Q |
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| T |
28006895 |
tgaatggccacataaacaaaattcaaacacctatc |
28006861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 15840680 - 15840745
Alignment:
| Q |
119 |
gttgagccaaaac-tcatccctccatcgtgaatggccaca-taaacaaaatccaaacacctatcgt |
182 |
Q |
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| T |
15840680 |
gttgtgccaaaacctcatacctccatcgtgaatggccacagaaaacaaaatccaaacatctatcgt |
15840745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 2660608 - 2660645
Alignment:
| Q |
138 |
ctccatcgtgaatggccacataaacaaaatccaaacac |
175 |
Q |
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| T |
2660608 |
ctccattgtgaagggccacataaacaaaatccaaacac |
2660645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 8133681 - 8133632
Alignment:
| Q |
141 |
catcgtgaatggccacataaacaaaatccaaacacctatcgtcatctact |
190 |
Q |
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| T |
8133681 |
catcatgaatggccacaaaaacaaaattcaaacacctattgtcaactact |
8133632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 26475147 - 26475104
Alignment:
| Q |
138 |
ctccatcgtgaatggccacataaacaaaatccaaacacctatcg |
181 |
Q |
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| T |
26475147 |
ctccatcgtgaatggccatagaatcaaaatccaaacacctatcg |
26475104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 2792282 - 2792330
Alignment:
| Q |
334 |
aaaaaactttagttaagaaacagacttctaatctcgaatcaaaagtgat |
382 |
Q |
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| T |
2792282 |
aaaaaacttgagtcaagaaactgacttccgatctcgaatcaaaagtgat |
2792330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 24991741 - 24991788
Alignment:
| Q |
136 |
ccctccatcgtgaatggccacataaacaaaatccaaacacctatcgtc |
183 |
Q |
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| T |
24991741 |
ccctccaacgtgaatgggcacaaaaacaaaatccaaatacctatcgtc |
24991788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 12220974 - 12220930
Alignment:
| Q |
139 |
tccatcgtgaatggccacataaacaaaatccaaacacctatcgtc |
183 |
Q |
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| T |
12220974 |
tccatcttgaatgaccacaaaaacaaaatccaaacacatatcgtc |
12220930 |
T |
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