View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_high_3 (Length: 606)
Name: NF7415_high_3
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 13 - 590
Target Start/End: Complemental strand, 49300574 - 49299995
Alignment:
| Q |
13 |
atacttatgatagcattaagctatacaacaagttaaactttgatatatacacacacaca--tacagtccaatgatcacaaattactagattatacgactt |
110 |
Q |
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| T |
49300574 |
atacttatgatagcattaagctatacaacaagttaaactttgatatatacacacacacacatacagtccaatgatcacaaattactagattatacgactt |
49300475 |
T |
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| Q |
111 |
ttaagttaatctctacacaaacaattctacataaatcaaatccttattaaaattgttactaaaagattattgtttaagggaatgacaaatgtataaatgg |
210 |
Q |
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| T |
49300474 |
ttaagttaatctcaacacaaacaattctacataaatcaaatccttattaaaattgttactaaaagattattgtttaagggaatgacaaatgtataaatgg |
49300375 |
T |
|
| Q |
211 |
tgttatatcttccaaccatattttttatacatgaagtgcatgtggcaaatgaaagcgtacgtaaggaattaaaattcctcctggtcaaaagagttatata |
310 |
Q |
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| T |
49300374 |
tgttatatcttccaaccatattttttatacatgaagtgcatgtggcaaatgaaagcgtacgtaaggaattaaaattcctcctggtcaaaagagttgtata |
49300275 |
T |
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| Q |
311 |
acctacaaacaaattcatgcataaaattaaaaggtatggaatgttacttgctgaaattagtgggtataatcagatcacacgccatcatgcatgcctaata |
410 |
Q |
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| T |
49300274 |
acctacaaacaaattcatgcataaaattaaaaggtatggaatgttacttgctgaaattagtgggtataatcagatcacacgccatcatgcatgcctaata |
49300175 |
T |
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| Q |
411 |
cagccgtaaacttaatttctaattactccataatttttaatattagggattcgatgtggacaaattaatgtcaaggattcaacatactttttgggggtat |
510 |
Q |
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| T |
49300174 |
cagccgtaaacttaattgctaattactccataattttcaatattagggattcgatgtggacaaattaatgtcaagaattcaacatactttttgggggtat |
49300075 |
T |
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| Q |
511 |
aacacaactactaatgatcacgataaagtagtgcatagcatatttttccgcgcaagtttttatcattacaatgagtatgt |
590 |
Q |
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| T |
49300074 |
aacacaactactaatgatcacgataaagtagtgcatagcatatttttccgcgcaagtttttatcattacaatgagtatgt |
49299995 |
T |
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