View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7415_high_34 (Length: 261)
Name: NF7415_high_34
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_high_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 44495195 - 44495425
Alignment:
| Q |
16 |
atgtaaataaaaatgctttatgtacccaaatttcatatatttttgcattttaaataaaaggttatatgttattgtatatgcatgtttcaggataatcagg |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44495195 |
atgtaaataaaaatgctttatgtatccaaatttcatatatttttgcattttaaataaaaggttatatgttattgtatatgcatgtttcaggataatcagg |
44495294 |
T |
|
| Q |
116 |
ataaaatgactagaccgacaggcacctgcaattacaaggtgatcatagaaacaagctgccgttctccacaatatacaacagatagaatcagtatttcatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44495295 |
ataaaatgactagaccgacaggcacctgcaattacaaggtgatcatagaaacaagctgccgttctccacaatatacaacagatagaatcagtatttcatt |
44495394 |
T |
|
| Q |
216 |
tggagatgctcatggctctgaggttcttttt |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44495395 |
tggagatgctcatggctctgaggttcttttt |
44495425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 44467658 - 44467758
Alignment:
| Q |
141 |
ctgcaattacaaggtgatcatagaaacaagctgccgttctccacaatatacaacagatagaatcagtatttcatttggagatgctcatggctctgaggtt |
240 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||||| ||||| || ||||| |||| ||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
44467658 |
ctgcgattacaaggtgaccatagcaacaagctgcaaatctcctttatctacaaaagatgaaatcagtattttatttggagatgctgatggctctgaggtt |
44467757 |
T |
|
| Q |
241 |
c |
241 |
Q |
| |
|
| |
|
|
| T |
44467758 |
c |
44467758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 44489248 - 44489327
Alignment:
| Q |
166 |
acaagctgccgttctccacaatatacaacagatagaatcagtatttcatttggagatgctcatggctctgaggttctttt |
245 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| ||||||| ||| ||||||||||| || ||||||| |||||||||| |
|
|
| T |
44489248 |
acaagctgcaattctccagcatatacaacagatcaaatcagtcttttatttggagatgatcttggctctaaggttctttt |
44489327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University