View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_high_35 (Length: 258)
Name: NF7415_high_35
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 39133300 - 39133541
Alignment:
| Q |
1 |
tgattgatgtggaaacgcttattattttcttgcagcagtgcaaggtaatgaccacctggtaattttacttcattcatgttaagttgcatttgtgttttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39133300 |
tgattgatgtggaaacgcttattattttcttgcagcagtgcaaggtaatgaccacctggtaattttacttcattcatgttaagttgcatttgtgttttgt |
39133399 |
T |
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| Q |
101 |
acttctgcttctgtaagttctgaaaccaatgtgaacattattaatagtctgtgattcccatttcagacatggactattgtgacagcatctgta--tttct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
39133400 |
acttctgcttctgtaagttctgaaaccaatgtgaacattattaatagtctgtgattcccatttcagacatcgactattgtgacagcatctgtatttttct |
39133499 |
T |
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| Q |
199 |
catccaagattttgagaacatggtggaagcagaagagctttc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39133500 |
catccaagattttgagaacatggtggaagcagaagagctttc |
39133541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 26059442 - 26059542
Alignment:
| Q |
1 |
tgattgatgtggaaacgcttattattttcttgcagcagtgcaaggtaatgaccacctggtaattttacttca-ttcatgttaagttgcatttgtgttttg |
99 |
Q |
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||||||||||||||| |||||||||||| | ||||||||||| || || |||||| |||||||||||||||| ||| | ||||||||| ||||||||||| |
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| T |
26059442 |
tgattgatgtggaaatgcttattatttt-tggcagcagtgcaggggaacgaccacttggtaattttacttcatttcttattaagttgcttttgtgttttg |
26059540 |
T |
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| Q |
100 |
ta |
101 |
Q |
| |
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|| |
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| T |
26059541 |
ta |
26059542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 26059542 - 26059585
Alignment:
| Q |
134 |
aacattattaatagtctgtgattcccatttcagacatggactat |
177 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
26059542 |
aacattactaatagcatgtgattcccatttcagacatggactat |
26059585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 26059626 - 26059661
Alignment:
| Q |
204 |
aagattttgagaacatggtggaagcagaagagcttt |
239 |
Q |
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| T |
26059626 |
aagattttgagaacatggtggaagcagcagagcttt |
26059661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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