View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_high_4 (Length: 561)
Name: NF7415_high_4
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 13 - 543
Target Start/End: Original strand, 46171100 - 46171627
Alignment:
| Q |
13 |
aatattgatagaactttgcaattccttcaccatagaaaaccaatctgaaaaataatatgtaacattttgtgccctgggatcttttgctccatcaaaccaa |
112 |
Q |
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| T |
46171100 |
aatattgatagaactttgcaattccttcaccatagaaaaccaatctgaaaaataatatgtaacattttgtgccctgggatcttttgctccatcaaaccaa |
46171199 |
T |
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| Q |
113 |
atttccctaacatcttgatatctatnnnnnnnnnnnnnngtatacaacataatgtaaaattcgtaattgccattggatatctggattgacaataaatttg |
212 |
Q |
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| T |
46171200 |
atttccctaacatcttgatatctataaaaacaaaaa---gtatacaacataatgtaaaattcgtaattgtcattggatatctggattgacaataaatttg |
46171296 |
T |
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| Q |
213 |
ataaaatcactatgacacgcgtaactttcattaaagttatggtgatatacaaccattcttctaattaaatccaaacattcgcttaatctatgagatcaaa |
312 |
Q |
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| T |
46171297 |
ataaaatcactatgacacgcgtaactttcattaaagttatggtgatatacaaccattcttctaattaaatccaaacattcgcttaatctatgagatcaaa |
46171396 |
T |
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| Q |
313 |
caaagcaatcacaatacataaaataaaaatttgagactcactttttaagaagctcttgcaattgagccaaatagtattcattgtaaagcaaatcatgacc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46171397 |
caaagcaatcacaatacataaaataaaaatttgagactcactttttaagaagctcttgcaattgagccaaatagtattcattgtaaagcaaatcatgacc |
46171496 |
T |
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| Q |
413 |
atatctagaatcatgtctatcccaaggtgaaagatagatcccaacatcaattcctttatcagtggctgcattgacaaactctttaacaacatcaccctta |
512 |
Q |
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| T |
46171497 |
atatctagaatcatgtctatcccaaggtgaaagatagatcccaacatcaattcctttatcagtggctgcattgacaaactctttaacaacatcaccctta |
46171596 |
T |
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| Q |
513 |
ccattttgccatttactactaatgacagaat |
543 |
Q |
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| T |
46171597 |
ccattttgccatttactactaatgacagaat |
46171627 |
T |
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