View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7415_high_51 (Length: 206)

Name: NF7415_high_51
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7415_high_51
NF7415_high_51
[»] chr4 (7 HSPs)
chr4 (21-191)||(45772918-45773088)
chr4 (10-120)||(45778208-45778318)
chr4 (124-192)||(55874623-55874691)
chr4 (19-171)||(45772161-45772312)
chr4 (28-152)||(52870072-52870195)
chr4 (21-171)||(45778625-45778773)
chr4 (123-191)||(38709524-38709592)
[»] chr1 (4 HSPs)
chr1 (59-191)||(29148978-29149107)
chr1 (59-127)||(40648953-40649021)
chr1 (56-126)||(36385703-36385776)
chr1 (65-127)||(12926562-12926624)
[»] chr8 (3 HSPs)
chr8 (21-171)||(41828793-41828942)
chr8 (93-188)||(34666842-34666937)
chr8 (145-191)||(41828154-41828200)
[»] chr7 (4 HSPs)
chr7 (28-152)||(85005-85128)
chr7 (61-127)||(32859919-32859985)
chr7 (74-155)||(39146842-39146921)
chr7 (73-156)||(23632973-23633054)
[»] chr3 (3 HSPs)
chr3 (28-152)||(41040578-41040702)
chr3 (59-126)||(8435976-8436043)
chr3 (59-126)||(8439521-8439588)
[»] chr5 (3 HSPs)
chr5 (28-152)||(39149390-39149510)
chr5 (20-155)||(6903185-6903316)
chr5 (51-173)||(4790117-4790236)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 45773088 - 45772918
Alignment:
Q  21 ggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgc 120  Q
    ||||||||||||||||| |||  ||||||||||  || ||||  ||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||    
T  45773088 ggtggagtttcacatggaaaatgtgattcattttccaccatgaaaaagtttattttttaccatttaattaaagaagagcatggattttaccatagtctgc 45772989  T
Q  121 ctacactttatatttttccctcatcatcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaa 191  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||    
T  45772988 ctacactatatattttcccctcatcatcttcagcctcatgaaaatgcaaatctgcaatttaccaccaccaa 45772918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 45778208 - 45778318
Alignment:
Q  10 ggatcgttttaggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaatttta 109  Q
    ||||||||||||||||||||||||||| ||||| |||||| |||||||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  45778208 ggatcgttttaggtggagtttcacatgagaaaggtgattcctttctcactatgggaaagtttattttttaccatttgattaaagaagagcatggatttta 45778307  T
Q  110 tcatagtctgc 120  Q
     ||||||||||    
T  45778308 ccatagtctgc 45778318  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 55874691 - 55874623
Alignment:
Q  124 cactttatatttttccctcatcatcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaaa 192  Q
    |||| |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  55874691 cactatatattttcccctcatcatcttcaaccccatgaaaatgcaaatctgcaattcaccaccaccaaa 55874623  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 45772161 - 45772312
Alignment:
Q  19 taggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaag-agcatgaattttatcatagtc 117  Q
    ||||||||||||||||||| |||| | | || |||| || |||  ||||||||  ||| ||||||| |||||||| || |||||  ||||||  || |||    
T  45772161 taggtggagtttcacatggaaaaggttaatcctttcccaccataagaaagttt--tttgtaccattagattaaaagaggagcatagattttacgatggtc 45772258  T
Q  118 tgcctacactttatatttttccctcatcatcttcaacctcatgaaaatgcaaat 171  Q
    |||| ||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  45772259 tgcccacactatatattttcccctcatcatcttcaacctcatgagaatgcaaat 45772312  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 52870195 - 52870072
Alignment:
Q  28 tttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 127  Q
    ||||||||||||||| ||| || |||  |||||||||||||||| |||||||||||| ||||| | | || |||  ||||||| || |||   |||||||    
T  52870195 tttcacatgggaaaggtgaatccttttccatcatgggaaagttt-ttttttaccattagattagagatgaacatagattttatgatggtcaatctacact 52870097  T
Q  128 ttatatttttccctcatcatcttca 152  Q
     ||||||||||||||||||||||||    
T  52870096 atatatttttccctcatcatcttca 52870072  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 45778773 - 45778625
Alignment:
Q  21 ggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaa-aagagcatgaattttatcatagtctg 119  Q
    |||||||||||||||||||||| | | || |||| || |||  |||||||  |||||||||||| |||||||| | ||||||  ||||||  || |||||    
T  45778773 ggtggagtttcacatgggaaaggttaatcctttcccaccat-agaaagtt--ttttttaccattagattaaaagaggagcatagattttacgatggtctg 45778677  T
Q  120 cctacactttatatttttccctcatcatcttcaacctcatgaaaatgcaaat 171  Q
    || ||||| ||||| || |||||||||||||||||||| | | |||||||||    
T  45778676 cccacactatatatcttcccctcatcatcttcaacctcgtaagaatgcaaat 45778625  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 38709592 - 38709524
Alignment:
Q  123 acactttatatttttccctcatcatcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaa 191  Q
    ||||| |||| ||| || |||||||||||||| | || ||||||||||||| |||||||||||||||||    
T  38709592 acactatatactttcccatcatcatcttcaacttgataaaaatgcaaatctgcaattcaccaccaccaa 38709524  T

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Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 59 - 191
Target Start/End: Original strand, 29148978 - 29149107
Alignment:
Q  59 catgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacactttatatttttccctcatcatcttcaacctca 158  Q
    ||||||||||||| |||  ||||||| ||||||| |  | ||| ||||||||||| ||| |||||| ||  ||||||||||||||||||||||||||||     
T  29148978 catgggaaagttt-tttcctaccattagattaaagagcaacataaattttatcatggtcagcctacgct--atatttttccctcatcatcttcaacctcg 29149074  T
Q  159 tgaaaatgcaaatctccaattcaccaccaccaa 191  Q
    ||||||||||||| | ||||||| || ||||||    
T  29149075 tgaaaatgcaaatatgcaattcagcatcaccaa 29149107  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 40648953 - 40649021
Alignment:
Q  59 catgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 127  Q
    ||||||||||||||||||  | |||| ||||||||| ||||||  || || ||||||||||||||||||    
T  40648953 catgggaaagtttattttggatcattagattaaaaaggagcatagatgttttcatagtctgcctacact 40649021  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 36385703 - 36385776
Alignment:
Q  56 catcatgggaaagtttatttt---ttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacac 126  Q
    |||||||||||||||| ||||   |||||||| ||||||| | ||| || ||||||||||||| ||||||||||    
T  36385703 catcatgggaaagtttttttttttttaccattagattaaagaggagtattaattttatcataggctgcctacac 36385776  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 12926624 - 12926562
Alignment:
Q  65 aaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 127  Q
    ||||||||||||  | |||| ||||||||| ||||||  || |||||||||||||||||||||    
T  12926624 aaagtttattttggatcattagattaaaaaggagcatagatgttatcatagtctgcctacact 12926562  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 41828942 - 41828793
Alignment:
Q  21 ggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaag-agcatgaattttatcatagtctg 119  Q
    |||||||||||||||| ||||| | | || |||  ||||||| ||||||||  ||| ||||||| |||||||| || | |||  ||||||  || |||||    
T  41828942 ggtggagtttcacatgagaaaggttaatctttttccatcatgagaaagttt--tttgtaccattagattaaaataggatcatagattttacgattgtctg 41828845  T
Q  120 cctacactttatatttttccctcatcatcttcaacctcatgaaaatgcaaat 171  Q
    || ||||| |||||||| |||||||||||||||||||| ||| |||||||||    
T  41828844 cccacactatatattttcccctcatcatcttcaacctcgtgagaatgcaaat 41828793  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 34666842 - 34666937
Alignment:
Q  93 aaagagcatgaattttatcatagtctgcctacactttatatttttccctcatcatcttcaacctcatgaaaatgcaaatctccaattcaccaccac 188  Q
    |||||||||  ||||||| || || |||||||| | |||||||| | |||||||||||||||||  ||| ||||||| ||| ||||||||||||||    
T  34666842 aaagagcatagattttatgatggtatgcctacattatatattttccactcatcatcttcaaccttgtgagaatgcaactctgcaattcaccaccac 34666937  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 41828154 - 41828200
Alignment:
Q  145 catcttcaacctcatgaaaatgcaaatctccaattcaccaccaccaa 191  Q
    ||||||||||||| ||||||||||||||| ||||| ||| |||||||    
T  41828154 catcttcaacctcgtgaaaatgcaaatctgcaatttaccgccaccaa 41828200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 85128 - 85005
Alignment:
Q  28 tttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 127  Q
    ||||||||||||||| ||| || |||| || ||||| ||||||| |||||||||||| ||||| | | || |||  ||||||| || |||  ||||||||    
T  85128 tttcacatgggaaaggtgaatcctttcccaccatggaaaagttt-ttttttaccattagattagagatgaacatagattttatgatggtcaacctacact 85030  T
Q  128 ttatatttttccctcatcatcttca 152  Q
     ||||||||||||||||||||||||    
T  85029 atatatttttccctcatcatcttca 85005  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 32859985 - 32859919
Alignment:
Q  61 tgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 127  Q
    ||||||||||||||||  | |||| ||||||||||||||||  || |||||||||||||||||||||    
T  32859985 tgggaaagtttattttggatcattagattaaaaaagagcatagatattatcatagtctgcctacact 32859919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 39146842 - 39146921
Alignment:
Q  74 tttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacactttatatttttccctcatcatcttcaacc 155  Q
    ||||||||||| ||||||| | ||| ||  ||||||| |||||||||| ||||||  |||||| ||||||||||||||||||    
T  39146842 tttttaccattagattaaagaggagtatagattttatgatagtctgcccacactt--tattttcccctcatcatcttcaacc 39146921  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 23632973 - 23633054
Alignment:
Q  73 ttttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacactttatatttttccctcatcatcttcaacct 156  Q
    |||||||||||| ||||||| | ||| ||  ||||||| || ||||||| ||||||  |||||| |||||||||||||||||||    
T  23632973 ttttttaccattagattaaagaggagtatagattttatgatggtctgcccacactt--tattttcccctcatcatcttcaacct 23633054  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 41040578 - 41040702
Alignment:
Q  28 tttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 127  Q
    ||||||||||||||| ||| || ||||||| ||||  ||||||| |||||||||||| ||||| | | || |||  ||||||| || |||  ||||||||    
T  41040578 tttcacatgggaaaggtgaatcctttctcaccatgaaaaagttttttttttaccattagattagagatgaacatagattttatgatggtcaacctacact 41040677  T
Q  128 ttatatttttccctcatcatcttca 152  Q
     |||||||||||||||| |||||||    
T  41040678 atatatttttccctcattatcttca 41040702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 8435976 - 8436043
Alignment:
Q  59 catgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacac 126  Q
    ||||||||||||||||||  | |||| ||||||||| ||||||  || ||||||||||||||||||||    
T  8435976 catgggaaagtttattttggatcattagattaaaaaggagcatagatgttatcatagtctgcctacac 8436043  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 8439521 - 8439588
Alignment:
Q  59 catgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacac 126  Q
    ||||||||||||||||||  | |||| ||||||||| ||||||  || ||||||||||||||||||||    
T  8439521 catgggaaagtttattttggatcattagattaaaaaggagcatagatgttatcatagtctgcctacac 8439588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 39149510 - 39149390
Alignment:
Q  28 tttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacact 127  Q
    ||||||||||||||| ||| || |||| || ||||||||||||| |||||||||||| ||||| | | || |||  ||||||| || ||   ||||||||    
T  39149510 tttcacatgggaaaggtgaatcctttcccaccatgggaaagttt-ttttttaccattagattagagatgaacatagattttatgatggt---cctacact 39149415  T
Q  128 ttatatttttccctcatcatcttca 152  Q
     ||||||||||||||||||||||||    
T  39149414 atatatttttccctcatcatcttca 39149390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 6903316 - 6903185
Alignment:
Q  20 aggtggagtttcacatgggaaagatgattcatttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctg 119  Q
    ||||||||||| ||||||||||||  | || ||| ||  ||||||||||||| ||||||| |||| ||||||| | ||| ||  ||||||| || |||||    
T  6903316 aggtggagtttaacatgggaaagactaatccttt-tccccatgggaaagttt-ttttttatcattagattaaagaggagtatagattttatgatggtctg 6903219  T
Q  120 cctacactttatatttttccctcatcatcttcaacc 155  Q
    || |||||||||  ||| ||||||||||||||||||    
T  6903218 cccacactttat--tttcccctcatcatcttcaacc 6903185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 173
Target Start/End: Complemental strand, 4790236 - 4790117
Alignment:
Q  51 tttctcatcatgggaaagtttattttttaccatttgattaaaaaagagcatgaattttatcatagtctgcctacactttatatttttccctcatcatctt 150  Q
    |||| ||||||||||||||| |||||| ||||||  |||||| | | | ||  ||||||| |||||||  | ||||| |||||||| ||| |||||||||    
T  4790236 tttcccatcatgggaaagtt-atttttgaccattaaattaaagaggtgtatagattttatgatagtctatcaacactatatattttccccacatcatctt 4790138  T
Q  151 caacctcatgaaaatgcaaatct 173  Q
    ||||||  ||| |||||||||||    
T  4790137 caacct--tgagaatgcaaatct 4790117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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