View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7415_high_6 (Length: 537)
Name: NF7415_high_6
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Original strand, 5441362 - 5441895
Alignment:
| Q |
19 |
cgtggttcatgtatttctaatgctttacctttctttaaagttttacatgatgtaagagatggacacgccgatctccaattcatattataccgtggtacag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5441362 |
cgtggttcatgtatttctaatgctttacctttctttaaagttttacatgatgtaagagatggacacgccgatctccaattcatattataccgtggtacag |
5441461 |
T |
|
| Q |
119 |
gtgtaccaggagctattgccgcagaagtaagtaaaaacattagtttgtttgtttgactacgatctagttcaaacctaaaatggttattatcatagtagtt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
5441462 |
gtgtaccaggagctattgccgcagaagtaagtaaaaacattagcttatttgtttgactacggtctaattcaaacctaaaatggttattatcatagtagtt |
5441561 |
T |
|
| Q |
219 |
ccctgcaattgcttgtctaaatttatcttcggttaacggacgacattgaagtccaacacgaactttgaccttaaacatcaataacactagtgcattaatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5441562 |
ccctgcaattgcttgtctaaatttatcttcggttaatggacgacattgaagtccaacacgaactttgaccttaaacatcaataacactagggcattaatc |
5441661 |
T |
|
| Q |
319 |
tcaataagtcttacaagaatcaccatcatatgatttatagtatag--------------------tagcatatgtacctgtgcaggatattgtgtttcat |
398 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5441662 |
tcaataagtcttacaagaatcaccatcatatgatttatagtatagtgatgcatctagacaacaattagcatatgtacctgtgcaggatattgtgtttcat |
5441761 |
T |
|
| Q |
399 |
tggaataatcatcattaatccaagcataagggtctatatacatctttcccatgctagatgcctcaaaaattccatgtagcttcctatcagtgtagttgaa |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5441762 |
tggaataatcatcattaatccaagcataagggtctatatacatctttcccatgctagatgcctcaaaaattccatgtagcttcctatcagtgtagttgaa |
5441861 |
T |
|
| Q |
499 |
tagaaacaaaggtaacccaggatcaatattcttc |
532 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |
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| T |
5441862 |
tagaaacaaaggtaacccaggatcaatgttcttc |
5441895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 373 - 532
Target Start/End: Complemental strand, 3856104 - 3855945
Alignment:
| Q |
373 |
tacctgtgcaggatattgtgtttcattggaataatcatcattaatccaagcataagggtctatatacatctttcccatgctagatgcctcaaaaattcca |
472 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||| |
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| T |
3856104 |
tacctgtgcaggatattgtgtttcgtcggaataatcatcattaatccatgcataagggtctatatacatttttcccttgctagatgcctcaaaaatccca |
3856005 |
T |
|
| Q |
473 |
tgtagcttcctatcagtgtagttgaatagaaacaaaggtaacccaggatcaatattcttc |
532 |
Q |
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|| ||||| |||||||| || ||||||||||||||||| ||||| | ||||||||||||| |
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| T |
3856004 |
tgaagctttctatcagtataattgaatagaaacaaaggcaacccggaatcaatattcttc |
3855945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 373 - 532
Target Start/End: Complemental strand, 3864861 - 3864702
Alignment:
| Q |
373 |
tacctgtgcaggatattgtgtttcattggaataatcatcattaatccaagcataagggtctatatacatctttcccatgctagatgcctcaaaaattcca |
472 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||| |
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| T |
3864861 |
tacctgtgcaggatattgtgtttcgtcggaataatcatcattaatccatgcataagggtctatatacatttttcccttgctagatgcctcaaaaatccca |
3864762 |
T |
|
| Q |
473 |
tgtagcttcctatcagtgtagttgaatagaaacaaaggtaacccaggatcaatattcttc |
532 |
Q |
| |
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|| ||||| |||||||| || ||||||||||||||||| ||||| | ||||||||||||| |
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|
| T |
3864761 |
tgaagctttctatcagtataattgaatagaaacaaaggcaacccggaatcaatattcttc |
3864702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 88 - 293
Target Start/End: Complemental strand, 3856420 - 3856215
Alignment:
| Q |
88 |
gatctccaattcatattataccgtggtacaggtgtaccaggagctattgccgcagaagtaagtaaaaacattagtttgtttgtttgactacgatctagtt |
187 |
Q |
| |
|
|||||||| ||| ||||||| || |||||| |||| |||||||||||| | ||| | |||||| ||||||| ||| ||||||||||||| ||||||| |
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| T |
3856420 |
gatctccatttcgtattatatcgcggtacatatgtatcaggagctattggtgtagacgcgagtaaatacattagcttggttgtttgactacggtctagtt |
3856321 |
T |
|
| Q |
188 |
caaacctaaaatggttattatcatagtagttccctgcaattgcttgtctaaatttatcttcggttaacggacgacattgaagtccaacacgaactttgac |
287 |
Q |
| |
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|||||| |||||||||||| ||||| |||||| | |||||| || || |||||||||||||| ||||| |||||||||||||| ||||||||||| || |
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| T |
3856320 |
caaaccaaaaatggttattgtcataatagttctccgcaattactcgttcaaatttatcttcggacaacgggcgacattgaagtccgacacgaacttttac |
3856221 |
T |
|
| Q |
288 |
cttaaa |
293 |
Q |
| |
|
|||||| |
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|
| T |
3856220 |
cttaaa |
3856215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 88 - 293
Target Start/End: Complemental strand, 3865177 - 3864972
Alignment:
| Q |
88 |
gatctccaattcatattataccgtggtacaggtgtaccaggagctattgccgcagaagtaagtaaaaacattagtttgtttgtttgactacgatctagtt |
187 |
Q |
| |
|
|||||||| ||| ||||||| || |||||| |||| |||||||||||| | ||| | |||||| ||||||| ||| ||||||||||||| ||||||| |
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| T |
3865177 |
gatctccatttcgtattatatcgcggtacatatgtatcaggagctattggtgtagacgcgagtaaatacattagcttggttgtttgactacggtctagtt |
3865078 |
T |
|
| Q |
188 |
caaacctaaaatggttattatcatagtagttccctgcaattgcttgtctaaatttatcttcggttaacggacgacattgaagtccaacacgaactttgac |
287 |
Q |
| |
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|||||| |||||||||||| ||||| |||||| | |||||| || || |||||||||||||| ||||| |||||||||||||| ||||||||||| || |
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| T |
3865077 |
caaaccaaaaatggttattgtcataatagttctccgcaattactcgttcaaatttatcttcggacaacgggcgacattgaagtccgacacgaacttttac |
3864978 |
T |
|
| Q |
288 |
cttaaa |
293 |
Q |
| |
|
|||||| |
|
|
| T |
3864977 |
cttaaa |
3864972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 519
Target Start/End: Original strand, 25960927 - 25960988
Alignment:
| Q |
458 |
gcctcaaaaattccatgtagcttcctatcagtgtagttgaatagaaacaaaggtaacccagg |
519 |
Q |
| |
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||||||||||||||||| ||| |||||||| ||||||| || ||||| | ||| |||||||| |
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|
| T |
25960927 |
gcctcaaaaattccatgaagcgtcctatcactgtagttaaacagaaaaagaggcaacccagg |
25960988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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