View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7415_high_7 (Length: 527)
Name: NF7415_high_7
Description: NF7415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7415_high_7 |
 | |
|
| [»] scaffold0341 (4 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 20)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 13 - 510
Target Start/End: Original strand, 47744050 - 47744547
Alignment:
| Q |
13 |
atggacatcatattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagat |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744050 |
atggaaatcatattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagat |
47744149 |
T |
|
| Q |
113 |
attttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744150 |
attttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctc |
47744249 |
T |
|
| Q |
213 |
ttgcaattcctccaatgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcata |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47744250 |
ttgcaattcctccaatgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatacatacacaaaattagatattttagttgtcata |
47744349 |
T |
|
| Q |
313 |
tgtaagagagcaacaatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatcttt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744350 |
tgtaagagagcaacaatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatcttt |
47744449 |
T |
|
| Q |
413 |
ctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744450 |
ctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgt |
47744547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 510
Target Start/End: Original strand, 47716286 - 47716783
Alignment:
| Q |
13 |
atggacatcatattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagat |
112 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
47716286 |
atggaaatcatatcataatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcgataccaaaatctgat |
47716385 |
T |
|
| Q |
113 |
attttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctc |
212 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47716386 |
attttaggattcaatttttcgtctaagagaatgttacccgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaaggcctc |
47716485 |
T |
|
| Q |
213 |
ttgcaattcctccaatgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcata |
312 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||| || ||| || |||| |||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
47716486 |
tagcaatacctccaatgattttgtagcgcctttcccagtctaattgtgctttctttattggatctatacatacacaaaattagatattttagtagtcata |
47716585 |
T |
|
| Q |
313 |
tgtaagagagcaacaatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatcttt |
412 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
47716586 |
tgcatgagagcaacaatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattaggaacaaattcatagaaaagcaatcttt |
47716685 |
T |
|
| Q |
413 |
ctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47716686 |
ctcttccttctagacaaaaaccaagtagtcaaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgt |
47716783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 22 - 510
Target Start/End: Original strand, 47711544 - 47712032
Alignment:
| Q |
22 |
atattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttagga |
121 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || ||||| || |||||||||||| |
|
|
| T |
47711544 |
atattctgatacttactatgttccaacgattttatttgtatttacttgagtttgatcgataagaagtagtctggctatgccaaagtctgatattttagga |
47711643 |
T |
|
| Q |
122 |
ttcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattc |
221 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || || | |
|
|
| T |
47711644 |
ttcaacttttcatccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctcatgaaggtaaagaaggcctctagctatac |
47711743 |
T |
|
| Q |
222 |
ctccaatgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcatatgtaagaga |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | | |||| |||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
47711744 |
ctccaatgattttgtagcgcctttcccaatccaaacatgctttttttattggatctatacatacacaaaattagctattttagtagtcatatgtaagaga |
47711843 |
T |
|
| Q |
322 |
gcaacaatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttcctt |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
47711844 |
acaacaatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattcggaacaaattcatagataagcaatctttctcttcctt |
47711943 |
T |
|
| Q |
422 |
ctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47711944 |
ctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgt |
47712032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 506
Target Start/End: Original strand, 47758433 - 47758926
Alignment:
| Q |
13 |
atggacatcatattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagat |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||| || |||||||| ||| |
|
|
| T |
47758433 |
atggaaatcatattctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaatctgat |
47758532 |
T |
|
| Q |
113 |
attttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctc |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
47758533 |
attttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgtgaaggtaaagaaggcctc |
47758632 |
T |
|
| Q |
213 |
ttgcaattcctccaatgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttgtcata |
312 |
Q |
| |
|
| ||||| |||||||||||||| |||||||||||||||||||| || |||| |||||||||||||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
47758633 |
tagcaatacctccaatgattttatagcgcctttcccaatccaactgtgctttctttattggatctatacatacacaaaattagttattttagtagtcata |
47758732 |
T |
|
| Q |
313 |
tgtaagagagcaacaatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatcttt |
412 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
47758733 |
tgtaagagagcaatgatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatcttt |
47758832 |
T |
|
| Q |
413 |
ctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatcccc |
506 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47758833 |
ctcttccttccagacaaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatcccc |
47758926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 47701294 - 47701444
Alignment:
| Q |
24 |
attctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggatt |
123 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||| |||||| |||||||||||||| ||||||| ||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
47701294 |
attcaaatacttactatgtcccaacgactttatctgtatttacttgagtttgatccacaagaattagcctggccataccaaaatctgatattttaggatt |
47701393 |
T |
|
| Q |
124 |
caacttttcgtccaagagaatgttacttgctttaagatcacgatgtataat |
174 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47701394 |
cattttttcatccaagagaatgttacttgctttaagatcacgatgtataat |
47701444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 358 - 497
Target Start/End: Complemental strand, 47774686 - 47774547
Alignment:
| Q |
358 |
aatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgat |
457 |
Q |
| |
|
||||| || ||||||||||||||||||| |||||||||||| | ||||| | ||||||| ||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
47774686 |
aatatgaagtaatcaagacttttatttgtaacatattcataaataagcagtttttctctcccttctaaactgaaaccaagtagcctaactaaatttcgat |
47774587 |
T |
|
| Q |
458 |
gttgaagcttagcgactaaaagcacttcattcttaaattc |
497 |
Q |
| |
|
||||||| || || |||||||| |||||||| |||||||| |
|
|
| T |
47774586 |
gttgaagtttggctactaaaagtacttcatttttaaattc |
47774547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 353 - 494
Target Start/End: Original strand, 6498077 - 6498218
Alignment:
| Q |
353 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
452 |
Q |
| |
|
||||||| || |||||||| |||||||| ||| ||||| ||||||| ||||| | |||||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
6498077 |
taccaaaaatgaaataatcgagacttttgttttgaacaaattcatatacaagtactctttctcttccttctagtgagaaaccgagtagtctaactaaatt |
6498176 |
T |
|
| Q |
453 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaa |
494 |
Q |
| |
|
||| |||||||||||||| || ||||| || ||||||||||| |
|
|
| T |
6498177 |
tcggtgttgaagcttagccaccaaaagtacctcattcttaaa |
6498218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 88 - 251
Target Start/End: Original strand, 6497778 - 6497941
Alignment:
| Q |
88 |
tagtctggcaataccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaa |
187 |
Q |
| |
|
|||||| || || |||||||||||||| |||||||||| | ||| || |||||||||||||||||||| ||||||||||| ||||| || ||| ||||| |
|
|
| T |
6497778 |
tagtcttgccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttacttgctttgagatcacgatgaataatgcgcagtcgagaa |
6497877 |
T |
|
| Q |
188 |
tcctgatgaaggtaaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
251 |
Q |
| |
|
|||| ||||||||||||| |||| ||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
6497878 |
tcctcgtgaaggtaaagaatgcctcgagcaatacctaaaatgattttgtagcgcatttcccaat |
6497941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 351 - 494
Target Start/End: Original strand, 6503394 - 6503537
Alignment:
| Q |
351 |
cctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa |
450 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||| | ||||| ||||| | |||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
6503394 |
cctaccaaaaataaagtaatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactaga |
6503493 |
T |
|
| Q |
451 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaa |
494 |
Q |
| |
|
|||| |||||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
6503494 |
tttctgtgttgaagtttagcaactaaaaacacttcattcttaaa |
6503537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 353 - 497
Target Start/End: Complemental strand, 47770783 - 47770639
Alignment:
| Q |
353 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
452 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||| ||||||| | ||| | |||||| || ||||||| || |||||||| |||||||||||||| |
|
|
| T |
47770783 |
taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagaagtctaactaaatt |
47770684 |
T |
|
| Q |
453 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattc |
497 |
Q |
| |
|
||||||||||||||| || ||||| | |||||||| |||||||| |
|
|
| T |
47770683 |
tcgatgttgaagcttggctactaataatacttcatttttaaattc |
47770639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 351 - 494
Target Start/End: Original strand, 6511014 - 6511157
Alignment:
| Q |
351 |
cctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa |
450 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| | ||||| | ||| | |||||||||||||||||| || ||||| |||| ||| |||||| |
|
|
| T |
6511014 |
cctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaa |
6511113 |
T |
|
| Q |
451 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaa |
494 |
Q |
| |
|
||||| |||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
6511114 |
tttcggtgttgaagtttagccactaaaaatacttcattcttaaa |
6511157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 386 - 497
Target Start/End: Complemental strand, 6525050 - 6524939
Alignment:
| Q |
386 |
gaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttc |
485 |
Q |
| |
|
||||| ||||||| ||||| | ||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
6525050 |
gaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgttgaagtttagccactaaaactacttc |
6524951 |
T |
|
| Q |
486 |
attcttaaattc |
497 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6524950 |
attcttaaattc |
6524939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 6510745 - 6510895
Alignment:
| Q |
101 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
200 |
Q |
| |
|
|||||||||| ||| |||||||||| || ||| ||||||||||| || |||||||| ||||||||||| |||| ||| ||| ||||||||| ||||||| |
|
|
| T |
6510745 |
ccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt |
6510844 |
T |
|
| Q |
201 |
aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
251 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
6510845 |
aaagaatgcctcgagcaatacctaaaatgattttgtagcgccttccccaat |
6510895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 47771061 - 47770950
Alignment:
| Q |
101 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
200 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||| ||||||||||| |||||||| | |||||| |||||||| || || ||||||||| |||||| | |
|
|
| T |
47771061 |
ccaaaatcagatatcttaggattcatctcatcgtctaagagaatgttgcttgctttgatatcacggtgtataattcgtaggcgagaatcctcatgaagat |
47770962 |
T |
|
| Q |
201 |
aaagaagacctc |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47770961 |
aaagaagacctc |
47770950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 6525440 - 6525264
Alignment:
| Q |
30 |
atacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactt |
129 |
Q |
| |
|
|||||||||| ||||| || ||| | |||||||| | |||||||| || ||| || ||||| || || |||||||| | ||| |||||||||| || |
|
|
| T |
6525440 |
atacttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctc |
6525341 |
T |
|
| Q |
130 |
ttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaa |
206 |
Q |
| |
|
||| || |||||||| || |||||||| ||||||||||| |||||||| || ||||||||| |||||||||||||| |
|
|
| T |
6525340 |
ttcatctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggtaaagaa |
6525264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 32 - 212
Target Start/End: Complemental strand, 47775020 - 47774840
Alignment:
| Q |
32 |
acttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactttt |
131 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||| ||||||||||||| | || || | ||| || | |||||||| |||||||||||||||| | | |
|
|
| T |
47775020 |
acttactaggttccaacaattttacttgtatttccttgagtttgatcaataacaaacaatctcgccaatccaaaatcggatattttaggattcatcccgt |
47774921 |
T |
|
| Q |
132 |
cgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctc |
212 |
Q |
| |
|
|||| |||||||| || || ||||| |||||||| |||||||| || || ||||||||| |||||| |||| |||||||| |
|
|
| T |
47774920 |
cgtctaagagaatattgctagctttgagatcacggtgtataatgcggaggcgagaatcctcatgaagataaataagacctc |
47774840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 494
Target Start/End: Original strand, 6515437 - 6515580
Alignment:
| Q |
351 |
cctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa |
450 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| | || || | ||| | |||||| || |||||||| || ||||| |||| |||||||||| |
|
|
| T |
6515437 |
cctaccaaaaataaagtaatcaagacttttattatgaacaaactcgtatataagtagtctttcactcccttctaggcagaaaccgagtaatctaactaaa |
6515536 |
T |
|
| Q |
451 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaa |
494 |
Q |
| |
|
||||| |||||||| ||||| | |||| ||| ||||||||||| |
|
|
| T |
6515537 |
tttcggtgttgaagtttagccaggaaaaacacctcattcttaaa |
6515580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 6515135 - 6515285
Alignment:
| Q |
101 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
200 |
Q |
| |
|
|||||||||| ||| |||||||||| | || || |||||||| || |||||||| ||||||||||| |||| ||| | | ||||||||| ||| |||| |
|
|
| T |
6515135 |
ccaaaatcagctatcttaggattcatccgtttatctaagagaatattgcttgctttgagatcacgatgaataacacgcactcgagaatcctcatggaggt |
6515234 |
T |
|
| Q |
201 |
aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
251 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
6515235 |
aaagaatgcctcgagcaatacctaaaatgattgtgtagcgcctttcccaat |
6515285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 6503125 - 6503275
Alignment:
| Q |
101 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
200 |
Q |
| |
|
|||||||||| ||| |||||||||| | ||| ||||||||||| ||||||||||| ||||| | ||| |||| ||||| | |||||||||| ||||||| |
|
|
| T |
6503125 |
ccaaaatcagctatcttaggattcatatgttcatccaagagaatattacttgctttgagatctctatgaataacacgaaatcgagaatcctggtgaaggt |
6503224 |
T |
|
| Q |
201 |
aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
251 |
Q |
| |
|
| |||| |||| ||||| ||| ||||||| ||||||| || |||||| |
|
|
| T |
6503225 |
atagaatgcctcgagcaatacctaaaatgattaggtagcgctttccccaat |
6503275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 353 - 467
Target Start/End: Complemental strand, 47689917 - 47689803
Alignment:
| Q |
353 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
452 |
Q |
| |
|
|||||||||| | |||||||||||||||||| | ||| | ||||| | || | |||||||||| || || ||| ||||| |||||| |||||||||| |
|
|
| T |
47689917 |
taccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatt |
47689818 |
T |
|
| Q |
453 |
tcgatgttgaagctt |
467 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47689817 |
tcgatgttgaagctt |
47689803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 11224978 - 11224684
Alignment:
| Q |
13 |
atggacatcatattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagat |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11224978 |
atggaaatcatattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagat |
11224879 |
T |
|
| Q |
113 |
attttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11224878 |
attttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctc |
11224779 |
T |
|
| Q |
213 |
ttgcaattcctccaatgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatgcatacacaaaattagatattttagttg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11224778 |
ttgcaattcctccaatgattttgtagcgcctttcccaatccaatcgttctttgtttattggatctatacatacacaaaattagatattttagttg |
11224684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 353 - 509
Target Start/End: Original strand, 27369137 - 27369293
Alignment:
| Q |
353 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
452 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||| ||||||| | ||| | ||||||||| ||||||||||| ||||||||||| ||||||| ||| |
|
|
| T |
27369137 |
taccaaatatgaagtaatcaagacttttatttgaaacaaattcataaataagtagtctttctctcccttctagacagaaaccaagtagcctaactagatt |
27369236 |
T |
|
| Q |
453 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttg |
509 |
Q |
| |
|
|||||||||||| || || |||||||| |||||||| ||||| |||| ||| ||||| |
|
|
| T |
27369237 |
tcgatgttgaagtttggctactaaaagtacttcatttttaaactcaacatctccttg |
27369293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 31 - 278
Target Start/End: Original strand, 28828946 - 28829193
Alignment:
| Q |
31 |
tacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaacttt |
130 |
Q |
| |
|
||||||||| |||||||| ||| || ||||||| |||| |||||||| ||||||| |||||| || || |||||||| | ||| |||| ||||| | | |
|
|
| T |
28828946 |
tacttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcatgtct |
28829045 |
T |
|
| Q |
131 |
tcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaatga |
230 |
Q |
| |
|
| || ||||||||||| ||||||||||||||||| |||||||| || ||| ||||||| | |||||| ||||||| ||||| | ||| ||| ||||| |
|
|
| T |
28829046 |
ccatctaagagaatgttgcttgctttaagatcacggtgtataatgcgtagtcgagaatcttcatgaagataaagaacacctcgagtaataccttgaatga |
28829145 |
T |
|
| Q |
231 |
ttttgtagcgcctttcccaatccaatcgttctttgtttattggatcta |
278 |
Q |
| |
|
||||||||||| |||||||||| ||| || |||| ||| ||||||||| |
|
|
| T |
28829146 |
ttttgtagcgcttttcccaatctaattgtgctttctttgttggatcta |
28829193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 21 - 250
Target Start/End: Original strand, 28859955 - 28860184
Alignment:
| Q |
21 |
catattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttagg |
120 |
Q |
| |
|
|||| ||||| |||||||| |||||||| | | || ||||||| |||| |||||||| | |||| |||||| || || |||||||| || || |||| |
|
|
| T |
28859955 |
cataatctaacacttactaggttccaacaactctacttgtatttgcttgggtttgatccaatagaattagtcttgccatgccaaaatctgaaatcttagc |
28860054 |
T |
|
| Q |
121 |
attcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaatt |
220 |
Q |
| |
|
||||| | |||||| | ||||||||| |||||||| ||||| || ||||||||||| ||| ||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
28860055 |
attcatgtcttcgtctaggagaatgttgcttgctttgagatcgcggtgtataatacgcagtcgagaatcctcatgaaggtaaagaacgcctcgagcaata |
28860154 |
T |
|
| Q |
221 |
cctccaatgattttgtagcgcctttcccaa |
250 |
Q |
| |
|
||| |||||||||||||||| |||||||| |
|
|
| T |
28860155 |
ccttgaatgattttgtagcgcttttcccaa |
28860184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 353 - 494
Target Start/End: Original strand, 28860321 - 28860462
Alignment:
| Q |
353 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
452 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||| | ||||||||||||| | ||||||||| ||||| | | |||||||||||||||||||||||| |
|
|
| T |
28860321 |
taccaaatatgaagtagtcaagacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaactaaatt |
28860420 |
T |
|
| Q |
453 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaa |
494 |
Q |
| |
|
|| |||||||| || || | ||||||||||||||||||||| |
|
|
| T |
28860421 |
ccggtgttgaagtttggccattaaaagcacttcattcttaaa |
28860462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 353 - 497
Target Start/End: Original strand, 28829285 - 28829429
Alignment:
| Q |
353 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
452 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| | | ||||||||| |||||||||||||| |
|
|
| T |
28829285 |
taccaaatatgaagtagtcaagacttttattaggaacaaattcatagacaagtaatctttctctcccttcaacagtaaaaccaaggagtctaactaaatt |
28829384 |
T |
|
| Q |
453 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattc |
497 |
Q |
| |
|
||| |||||||| || || || ||| | ||||| ||||||||||| |
|
|
| T |
28829385 |
tcggtgttgaagtttggccaccaaacgtacttcgttcttaaattc |
28829429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 28 - 278
Target Start/End: Original strand, 28854604 - 28854854
Alignment:
| Q |
28 |
taatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaac |
127 |
Q |
| |
|
|||||||||||| |||||||| | || ||||||| |||| |||||||| ||||||| |||||| || || || ||||| ||||| |||| ||||| |
|
|
| T |
28854604 |
taatacttactaagttccaacaacactacttgtattttcttgtgtttgatccacaagaattagtcttgccatgccgaaatctgatatcttagcattcatg |
28854703 |
T |
|
| Q |
128 |
ttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaa |
227 |
Q |
| |
|
||||| || |||||||| || | |||||| |||||||| |||||||| || ||| ||||||||| |||||| || |||| ||||| ||||| ||| || |
|
|
| T |
28854704 |
ttttcatctaagagaatattgcctgctttgagatcacggtgtataatgcgtagtcgagaatcctcatgaagatagagaacacctcgagcaatacctttaa |
28854803 |
T |
|
| Q |
228 |
tgattttgtagcgcctttcccaatccaatcgttctttgtttattggatcta |
278 |
Q |
| |
|
||||||||||||| |||||||||| ||| || |||| ||| | ||||||| |
|
|
| T |
28854804 |
tgattttgtagcgtttttcccaatctaattgtgctttctttgtaggatcta |
28854854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 373 - 509
Target Start/End: Original strand, 28874911 - 28875047
Alignment:
| Q |
373 |
agacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcga |
472 |
Q |
| |
|
||||||||||| |||| | ||||||||||||| | ||||||||| ||||| | | |||||||||||||||||| ||||| || |||||||| || || | |
|
|
| T |
28874911 |
agacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaaccaaattccggtgttgaagtttggcca |
28875010 |
T |
|
| Q |
473 |
ctaaaagcacttcattcttaaattcaatatccccttg |
509 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
28875011 |
ttaaaagcacttcattcttaaattctatatctccttg |
28875047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 28874525 - 28874782
Alignment:
| Q |
21 |
catattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttagg |
120 |
Q |
| |
|
|||| ||||| |||||||| ||| |||| | | || ||||||| |||| |||||||| ||||||| ||||| || || |||||||| || || |||| |
|
|
| T |
28874525 |
cataatctaacacttactaggtttcaacaactctacttgtatttgcttgggtttgatccacaagaataagtcttgccatgccaaaatctgagatcttagc |
28874624 |
T |
|
| Q |
121 |
attcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaatt |
220 |
Q |
| |
|
||||| | |||||| ||||||||||| |||||||| ||||| || ||||||||||| ||| |||||| |||||| ||||||| |||| ||||| |
|
|
| T |
28874625 |
attcacgtcttcgtctaagagaatgttgcttgctttgagatcgcggtgtataatacgcagtcttgaatccccatgaagataaagaacgcctcgagcaatg |
28874724 |
T |
|
| Q |
221 |
cctccaatgattttgtagcgcctttcccaatccaatcgttctttgtttattggatcta |
278 |
Q |
| |
|
||| |||||||||||||||| | |||||||| ||| || |||| || | |||||||| |
|
|
| T |
28874725 |
ccttgaatgattttgtagcgcttctcccaatctaattgtgctttcttcagtggatcta |
28874782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 32 - 256
Target Start/End: Original strand, 27368599 - 27368823
Alignment:
| Q |
32 |
acttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaataccaaaatcagatattttaggattcaactttt |
131 |
Q |
| |
|
|||||||| |||||||||||| |||||||| | ||| ||||||| ||| || || | |||| || | |||||||| ||||| |||||||||| || || |
|
|
| T |
27368599 |
acttactaggttccaacgattctatttgtacttccttcagtttgaccgataacaaatcgtcttgccaatccaaaatcggatatcttaggattcatctctt |
27368698 |
T |
|
| Q |
132 |
cgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggtaaagaagacctcttgcaattcctccaatgat |
231 |
Q |
| |
|
|||| || ||||| || |||||||| |||||||| |||||||| || | ||||||||| ||||| ||||||||||||| ||||| ||| ||||| |
|
|
| T |
27368699 |
cgtctaaaagaatattgcttgctttgagatcacggtgtataatgcgcaagcgagaatcctcgtgaagataaagaagacctcgagcaataccttttatgat |
27368798 |
T |
|
| Q |
232 |
tttgtagcgcctttcccaatccaat |
256 |
Q |
| |
|
||||||||| ||| ||||| |||| |
|
|
| T |
27368799 |
attgtagcgcgtttgccaattcaat |
27368823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 470
Target Start/End: Original strand, 28854962 - 28855079
Alignment:
| Q |
353 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
452 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||| |||||||||| || | ||||||||| ||||| | | ||||||||||| ||||||||||| |
|
|
| T |
28854962 |
taccaaatatgaagtagtcaagacttttattgggaacaaattcatagactagtagtctttctctcccttcgatagtaaaaccaagtaacctaactaaatt |
28855061 |
T |
|
| Q |
453 |
tcgatgttgaagcttagc |
470 |
Q |
| |
|
| |||||||||| ||||| |
|
|
| T |
28855062 |
ttgatgttgaagtttagc |
28855079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 454842 - 454895
Alignment:
| Q |
353 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagca |
406 |
Q |
| |
|
||||||||| || |||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
454842 |
taccaaataagaagtaatcaagacttttatttagtacatattcataaacaagca |
454895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 12425 - 12575
Alignment:
| Q |
101 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
200 |
Q |
| |
|
|||||||||| ||| |||||||||| || ||| ||||||||||| || |||||||| ||||||||||| |||| ||| ||| ||||||||| ||||||| |
|
|
| T |
12425 |
ccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt |
12524 |
T |
|
| Q |
201 |
aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
251 |
Q |
| |
|
|||||| |||| ||||| ||| ||||||||||||||||||| |||||| |
|
|
| T |
12525 |
aaagaatgcctcgagcaatacctaaaatgattttgtagcgccttccccaat |
12575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 367 - 494
Target Start/End: Original strand, 5092 - 5219
Alignment:
| Q |
367 |
taatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagct |
466 |
Q |
| |
|
||||||||||||||||| |||| | ||||| ||||| | |||||||||||||||||| |||||||| |||| |||||||| ||||| |||||||| | |
|
|
| T |
5092 |
taatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactagatttctgtgttgaagtt |
5191 |
T |
|
| Q |
467 |
tagcgactaaaagcacttcattcttaaa |
494 |
Q |
| |
|
|||| ||||||| ||||||||||||||| |
|
|
| T |
5192 |
tagcaactaaaaacacttcattcttaaa |
5219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 351 - 494
Target Start/End: Original strand, 12695 - 12837
Alignment:
| Q |
351 |
cctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa |
450 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| | ||||| | ||| | |||||||||||||||||| || ||||| |||| ||| |||||| |
|
|
| T |
12695 |
cctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaa |
12794 |
T |
|
| Q |
451 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaa |
494 |
Q |
| |
|
||||| |||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
12795 |
tttcggtgttgaagtttagccactaaaa-tacttcattcttaaa |
12837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 4804 - 4954
Alignment:
| Q |
101 |
ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt |
200 |
Q |
| |
|
|||||||||| ||| |||||||||| | ||| ||||||||||| ||||||||||| ||||| | ||| |||| ||||| | |||||||||| ||||||| |
|
|
| T |
4804 |
ccaaaatcagctatcttaggattcatatgttcatccaagagaatattacttgctttgagatctctatgaataacacgaaatcgagaatcctggtgaaggt |
4903 |
T |
|
| Q |
201 |
aaagaagacctcttgcaattcctccaatgattttgtagcgcctttcccaat |
251 |
Q |
| |
|
| |||| |||| ||||| ||| ||||||| ||||||| || |||||| |
|
|
| T |
4904 |
atagaatgcctcgagcaatacctaaaatgattaggtagcgctttccccaat |
4954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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